Factsheet for Bra034380.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001736.1-P	nucleus
Bra005565.1-P	nucleus, nucleus
Bra006219.1-P	endoplasmic reticulum
Bra006242.1-P
Bra007982.1-P
Bra007983.1-P
Bra009031.1-P	nucleus
Bra012894.1-P	nucleus
Bra013240.1-P	nucleus
Bra014835.1-P
Bra015456.1-P
Bra015735.1-P
Bra016143.1-P
Bra017840.1-P	nucleus
Bra018100.1-P
Bra021808.1-P	nucleus, nucleus
Bra022391.1-P	nucleus
Bra022897.1-P	nucleus, nucleus
Bra031349.1-P
Bra034198.1-P	nucleus
Bra036095.1-P	nucleus
Bra039199.1-P	nucleus, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27970.1	Bra015456.1-P	AT1G05805.1	20706207
AT2G27970.1	Bra007982.1-P	AT1G71380.1	20706207
AT2G27970.1	Bra007983.1-P	AT1G71380.1	20706207
AT2G27970.1	Bra016143.1-P	AT1G71380.1	20706207
AT2G27970.1	Bra015735.1-P	AT1G76540.1	20706207
AT2G27970.1	Bra039199.1-P	AT2G23430.1	20018602
AT2G27970.1	Bra039199.1-P	AT2G23430.1	20407024
AT2G27970.1	Bra005565.1-P	AT2G32710.1	20018602
AT2G27970.1	Bra021808.1-P	AT2G32710.1	20018602
AT2G27970.1	Bra022897.1-P	AT2G32710.1	20018602
AT2G27970.1	Bra005565.1-P	AT2G32710.1	20407024
AT2G27970.1	Bra021808.1-P	AT2G32710.1	20407024
AT2G27970.1	Bra022897.1-P	AT2G32710.1	20407024
AT2G27970.1	Bra001736.1-P	AT3G19150.1	20407024
AT2G27970.1	Bra022391.1-P	AT3G19150.1	20407024
AT2G27970.1	Bra031349.1-P	AT3G22310.1	20706207
AT2G27970.1	Bra013240.1-P	AT3G24810.1	20407024
AT2G27970.1	Bra018100.1-P	AT3G47930.1	20706207
AT2G27970.1	Bra012894.1-P	AT3G50630.1	20407024
AT2G27970.1	Bra036095.1-P	AT3G50630.1	20407024
AT2G27970.1	Bra014835.1-P	AT3G54180.1	20706207
AT2G27970.1	Bra034198.1-P	AT4G03270.1	20407024
AT2G27970.1	Bra017840.1-P	AT4G37630.1	20407024
AT2G27970.1	Bra009031.1-P	AT5G10440.1	20407024
AT2G27970.1	Bra006219.1-P	AT5G13840.1	20407024
AT2G27970.1	Bra006242.1-P	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30517	Canola	cytosol	100.0	100.0
AT2G27970.1	Thale cress	nucleus	83.95	81.93
KRH25124	Soybean	cytosol	81.48	75.0
KRH30550	Soybean	cytosol	81.48	75.0
Bra034614.1-P	Field mustard	cytosol	80.25	73.86
PGSC0003DMT400001218	Potato	cytosol	80.25	73.86
VIT_06s0061g00810.t01	Wine grape	cytosol	80.25	73.86
PGSC0003DMT400048460	Potato	cytosol	79.01	72.73
Os03t0146300-01	Rice	nucleus	80.25	72.22
TraesCS4A01G410900.1	Wheat	nucleus	79.01	71.11
TraesCS4B01G311000.1	Wheat	nucleus	79.01	71.11
TraesCS4D01G308900.1	Wheat	nucleus	79.01	71.11
GSMUA_Achr2P11710_001	Banana	nucleus	80.25	69.89
GSMUA_Achr2P11750_001	Banana	cytosol	80.25	48.87
HORVU4Hr1G079310.1	Barley	cytosol, mitochondrion, nucleus, plastid	79.01	47.76

Protein Annotations

MapMan:13.1.1.2.8	Gene3D:3.30.170.10	EnsemblPlantsGene:Bra034380	EnsemblPlants:Bra034380.1	EnsemblPlants:Bra034380.1-P	InterPro:Cyclin-dep_kinase_reg-sub
InterPro:Cyclin-dep_kinase_reg-sub_sf	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016538	GO:GO:0019538	GO:GO:0030234	GO:GO:0045859	GO:GO:0051301	InterPro:IPR036858
UniProt:M4EZY7	PFAM:PF01111	PRINTS:PR00296	ScanProsite:PS00944	PANTHER:PTHR23415	PANTHER:PTHR23415:SF29
SMART:SM01084	SUPFAM:SSF55637	UniParc:UPI0002543C4F	:	:	:

Description

AT2G27970 (E=2e-037) CKS2 | CKS2 (CDK-subunit 2); cyclin-dependent protein kinase/ cyclin-dependent protein kinase regulator

Coordinates

chrA04:-:12227774..12228253

Molecular Weight (calculated)

9744.8 Da

IEP (calculated)

9.717

GRAVY (calculated)

-0.695

Length

81 amino acids

Sequence
(BLAST)

1: MARIEYSDKY FDDTYEYRHV VLPPEVAKLL PKNRILAESE WRAIGVQQSR GWVHYAIHRP EPHIMLFRRT LNYQPPNPIP K

Best Arabidopsis Sequence Match ( AT2G27970.1 )
(BLAST)

1: MGQIQYSDKY FDDTFEYRHV VLPPEVAKLL PKNRILSESE WRAIGVQQSR GWVHYAIHRP EPHIMLFRRP LNYQQEHQAQ IAK

Arabidopsis Description

CKS2Cyclin-dependent kinases regulatory subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.