Factsheet for Bra034198.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001446.1-P
Bra005565.1-P
Bra014835.1-P
Bra018036.1-P
Bra021808.1-P
Bra022897.1-P
Bra029917.1-P
Bra034764.1-P
Bra038707.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03270.1	Bra005565.1-P	AT2G32710.1	20706207
AT4G03270.1	Bra021808.1-P	AT2G32710.1	20706207
AT4G03270.1	Bra022897.1-P	AT2G32710.1	20706207
AT4G03270.1	Bra001446.1-P	AT3G12280.1	22921914
AT4G03270.1	Bra034764.1-P	AT3G12280.1	22921914
AT4G03270.1	Bra038707.1-P	AT3G12280.1	22921914
AT4G03270.1	Bra018036.1-P	AT3G48750.1	20706207
AT4G03270.1	Bra029917.1-P	AT3G48750.1	20706207
AT4G03270.1	Bra014835.1-P	AT3G54180.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21951	Canola	nucleus	95.3	94.04
AT4G03270.1	Thale cress	nucleus	82.21	81.13
VIT_12s0134g00500.t01	Wine grape	nucleus	44.97	45.58
PGSC0003DMT400039033	Potato	nucleus	44.63	42.77
KRH22479	Soybean	cytosol	44.3	41.77
Solyc07g054950.1.1	Tomato	nucleus	43.29	41.61
KRH26876	Soybean	nucleus	43.96	41.59
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	34.23	40.64
GSMUA_Achr6P24270_001	Banana	nucleus	41.28	40.46
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	38.93	38.67
KRH56054	Soybean	cytosol, nucleus, plasma membrane	41.95	37.99
KRH25470	Soybean	nucleus	41.28	37.96
HORVU0Hr1G003280.5	Barley	cytosol, mitochondrion, nucleus	31.54	37.45
GSMUA_Achr9P30040_001	Banana	cytosol, nucleus, peroxisome	27.85	34.3
Zm00001d021745_P001	Maize	cytosol, nucleus, plastid	34.9	33.88
TraesCS2D01G215000.3	Wheat	cytosol, nucleus, plasma membrane	35.57	33.87
EER99528	Sorghum	cytosol	35.57	33.76
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	34.9	33.55
Os07t0556000-01	Rice	cytosol	34.56	32.19
TraesCS2B01G234800.1	Wheat	cytosol, nucleus, plasma membrane	36.58	31.96
GSMUA_Achr9P12120_001	Banana	nucleus	40.94	28.91
Bra038518.1-P	Field mustard	nucleus	25.17	25.86
Bra007901.1-P	Field mustard	nucleus	29.19	25.66
Bra037817.1-P	Field mustard	nucleus	24.16	25.53
HORVU7Hr1G117300.3	Barley	cytosol	14.09	25.45
Bra031858.1-P	Field mustard	nucleus	25.5	25.42
Bra009031.1-P	Field mustard	nucleus	25.17	25.25
Bra024383.1-P	Field mustard	nucleus	24.5	23.7
Bra030232.1-P	Field mustard	nucleus	27.85	23.38
Bra036051.1-P	Field mustard	nucleus	23.83	20.11
Bra029992.1-P	Field mustard	nucleus	23.15	19.6
Bra012909.1-P	Field mustard	nucleus	21.48	19.51
Bra012146.1-P	Field mustard	nucleus	22.48	18.93
Bra011501.1-P	Field mustard	nucleus	23.15	18.5
Bra017629.1-P	Field mustard	nucleus	22.82	18.48
Bra034612.1-P	Field mustard	nucleus	22.48	18.21
Bra009612.1-P	Field mustard	cytosol	18.46	16.18
Bra017840.1-P	Field mustard	nucleus	18.46	16.13
Bra005708.1-P	Field mustard	cytosol	18.46	16.04

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	EnsemblPlantsGene:Bra034198	EnsemblPlants:Bra034198.1	EnsemblPlants:Bra034198.1-P	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_D_plant	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0051726
UniProt:M4EZF5	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF188
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0002543BE4	SEG:seg	:

Description

AT4G03270 (E=1e-112) CYCD6;1 | CYCD6;1 (Cyclin D6;1); cyclin-dependent protein kinase

Coordinates

chrA01:+:26988033..26989449

Molecular Weight (calculated)

33850.5 Da

IEP (calculated)

6.280

GRAVY (calculated)

-0.204

Length

298 amino acids

Sequence
(BLAST)

001: MEFHLEHPLS HSPSIHNNND VALPPNSLFL VEPQHMPSPH YFHTLKSSAS LLSNRNHAVS SIIQYSRKLD DPSLTYLAVN YLDRFLSSED MMPQSKPWIL
101: KLISLSCVSL SAKMRKPDIS VCDLPVEGEM FDAQMIERME NVILGALKWR MRSVTPFSFL SFFLSLLFEL EEDHSVLKHS LKAQATDLTF SLQHDIKFLE
201: FKPSVVAAAA LLFASSEICP QQFPCFSNRI CQCTYVNKDE LMECYKAMQE RNVVEDNEGS NDTAVNVLDQ QFSSCEESAI TASSPKRRKI TTSTSRRC

Best Arabidopsis Sequence Match ( AT4G03270.1 )
(BLAST)

001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY

Arabidopsis Description

CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.