Factsheet for Bra011501.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001736.1-P
Bra002947.1-P
Bra006781.1-P
Bra009606.1-P
Bra015735.1-P
Bra018036.1-P
Bra022391.1-P
Bra028880.1-P
Bra029917.1-P
Bra034380.1-P
Bra039199.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34160.1	Bra015735.1-P	AT1G76540.1	12857813
AT4G34160.1	Bra039199.1-P	AT2G23430.1	12569402
AT4G34160.1	Bra039199.1-P	AT2G23430.1	16766674
AT4G34160.1	Bra034380.1-P	AT2G27970.1	17426018
AT4G34160.1	Bra034380.1-P	AT2G27970.1	20706207
AT4G34160.1	Bra001736.1-P	AT3G19150.1	17426018
AT4G34160.1	Bra022391.1-P	AT3G19150.1	17426018
AT4G34160.1	Bra001736.1-P	AT3G19150.1	20706207
AT4G34160.1	Bra022391.1-P	AT3G19150.1	20706207
AT4G34160.1	Bra018036.1-P	AT3G48750.1	11096103
AT4G34160.1	Bra029917.1-P	AT3G48750.1	11096103
AT4G34160.1	Bra018036.1-P	AT3G48750.1	16517759
AT4G34160.1	Bra029917.1-P	AT3G48750.1	16517759
AT4G34160.1	Bra018036.1-P	AT3G48750.1	16766674
AT4G34160.1	Bra029917.1-P	AT3G48750.1	16766674
AT4G34160.1	Bra018036.1-P	AT3G48750.1	17426018
AT4G34160.1	Bra029917.1-P	AT3G48750.1	17426018
AT4G34160.1	Bra018036.1-P	AT3G48750.1	20706207
AT4G34160.1	Bra029917.1-P	AT3G48750.1	20706207
AT4G34160.1	Bra009606.1-P	AT5G02220.1	17426018
AT4G34160.1	Bra028880.1-P	AT5G02220.1	17426018
AT4G34160.1	Bra009606.1-P	AT5G02220.1	20706207
AT4G34160.1	Bra028880.1-P	AT5G02220.1	20706207
AT4G34160.1	Bra002947.1-P	AT5G54900.1	20706207
AT4G34160.1	Bra006781.1-P	AT5G58150.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75405	Canola	nucleus	98.39	98.39
CDY69708	Canola	nucleus	96.51	96.26
Bra017629.1-P	Field mustard	nucleus	84.18	85.33
Bra034612.1-P	Field mustard	nucleus	84.18	85.33
AT4G34160.1	Thale cress	nucleus	85.52	84.84
VIT_07s0129g01100.t01	Wine grape	nucleus	47.72	57.61
PGSC0003DMT400066557	Potato	nucleus	51.74	53.91
VIT_03s0180g00040.t01	Wine grape	nucleus	54.69	52.85
Solyc01g107730.2.1	Tomato	nucleus	51.47	52.75
KRG90996	Soybean	nucleus	54.42	51.65
KRH35760	Soybean	nucleus	53.62	49.75
Bra012146.1-P	Field mustard	nucleus	45.31	47.74
Bra012909.1-P	Field mustard	nucleus	41.29	46.95
Bra036051.1-P	Field mustard	nucleus	42.9	45.33
Bra029992.1-P	Field mustard	nucleus	42.63	45.17
GSMUA_Achr1P09780_001	Banana	cytosol	34.32	32.99
Bra038518.1-P	Field mustard	nucleus	24.93	32.07
GSMUA_Achr2P05260_001	Banana	nucleus	29.49	31.88
GSMUA_Achr4P20220_001	Banana	nucleus	30.83	31.77
GSMUA_Achr3P13140_001	Banana	nucleus	34.32	31.45
HORVU5Hr1G050270.8	Barley	cytosol	29.22	31.05
TraesCS5A01G161000.1	Wheat	cytosol	29.22	30.79
TraesCS5B01G158400.1	Wheat	cytosol	29.22	30.79
TraesCS5D01G165900.1	Wheat	cytosol	29.22	30.79
GSMUA_AchrUn_...	Banana	cytosol	26.01	30.6
Bra007901.1-P	Field mustard	nucleus	27.35	30.09
Bra037817.1-P	Field mustard	nucleus	22.25	29.43
Os09t0111100-01	Rice	cytosol	28.69	29.4
GSMUA_Achr3P01010_001	Banana	nucleus	31.37	28.75
Bra024383.1-P	Field mustard	nucleus	23.59	28.57
Bra031858.1-P	Field mustard	nucleus	22.25	27.76
Bra030232.1-P	Field mustard	nucleus	26.27	27.61
Zm00001d019696_P001	Maize	cytosol	28.15	27.13
EER96424	Sorghum	cytosol	27.61	26.96
Zm00001d005293_P001	Maize	cytosol	27.61	26.34
Bra017840.1-P	Field mustard	nucleus	23.86	26.1
Bra009031.1-P	Field mustard	nucleus	20.11	25.25
Bra034198.1-P	Field mustard	nucleus	18.5	23.15
Bra009612.1-P	Field mustard	cytosol	18.77	20.59
Bra005708.1-P	Field mustard	cytosol	18.77	20.41

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	EnsemblPlantsGene:Bra011501	EnsemblPlants:Bra011501.1	EnsemblPlants:Bra011501.1-P	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:M4D4U4	PFAM:PF00134	PFAM:PF02984	ScanProsite:PS00292	PANTHER:PTHR10177
PANTHER:PTHR10177:SF351	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI00025458D0	SEG:seg

Description

AT4G34160 (E=2e-149) CYCD3;1, CYCD3 | CYCD3;1 (CYCLIN D3;1); cyclin-dependent protein kinase regulator/ protein binding

Coordinates

chrA01:-:1930100..1931467

Molecular Weight (calculated)

42509.5 Da

IEP (calculated)

4.531

GRAVY (calculated)

-0.295

Length

373 amino acids

Sequence
(BLAST)

001: MAIPKEEESR EEHNTSFLLD ALYCEEEKWE DDEEEEVEAV EENSSFSSAS TSSPLAILQQ DLFWEDEDLV TLFSKEEEQG LGCVDDVYLA TDRKEAVGWI
101: LRVNSHYGFS TLAAVLAITY LDKFICSYSL QRDKPWMLQL VSVACLSLAA KVEETHVPLL LDFQVEETKY VFEAKTIQRM ELLILSTLQW KMHLVTPLSF
201: LDHIIRRLGL KNNSHWDFLN RCHRLILSVI SDSRFVGYLP SVVAAATMMR IIEQVEPFDP LSYQTKLLGV LNITKEKVKS CYDLILELPM GLQIETQSRR
301: KRKSGESPSC VIDSNPFNSD ESSNDSWSAS SNNPPSSSPQ QQQPPLKKMR GDQETQKEKP VLHLPWAIVV ASP

Best Arabidopsis Sequence Match ( AT4G34160.1 )
(BLAST)

001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP

Arabidopsis Description

CYCD3-1Cyclin-D3-1 [Source:UniProtKB/Swiss-Prot;Acc:P42753]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.