Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5A01G161000.1 | Wheat | cytosol | 97.46 | 97.46 |
TraesCS5D01G165900.1 | Wheat | cytosol | 97.18 | 97.18 |
HORVU5Hr1G050270.8 | Barley | cytosol | 92.94 | 93.73 |
Zm00001d019696_P001 | Maize | cytosol | 74.29 | 67.96 |
Os09t0111100-01 | Rice | cytosol | 69.49 | 67.58 |
EER96424 | Sorghum | cytosol | 71.75 | 66.49 |
Zm00001d005293_P001 | Maize | cytosol | 72.6 | 65.73 |
GSMUA_Achr1P09780_001 | Banana | cytosol | 44.63 | 40.72 |
GSMUA_Achr4P20220_001 | Banana | nucleus | 40.11 | 39.23 |
GSMUA_Achr2P05260_001 | Banana | nucleus | 37.29 | 38.26 |
VIT_07s0129g01100.t01 | Wine grape | nucleus | 33.33 | 38.19 |
GSMUA_AchrUn_... | Banana | cytosol | 33.05 | 36.91 |
GSMUA_Achr3P13140_001 | Banana | nucleus | 42.09 | 36.61 |
PGSC0003DMT400039904 | Potato | nucleus | 32.2 | 35.4 |
Solyc12g088650.1.1 | Tomato | nucleus | 31.64 | 34.46 |
GSMUA_Achr3P01010_001 | Banana | nucleus | 39.27 | 34.15 |
PGSC0003DMT400020648 | Potato | nucleus | 31.07 | 33.13 |
VIT_03s0180g00040.t01 | Wine grape | nucleus | 35.59 | 32.64 |
KRH05626 | Soybean | cytosol | 19.49 | 32.09 |
VIT_18s0001g09920.t01 | Wine grape | nucleus | 32.77 | 31.18 |
KRH15412 | Soybean | cytosol | 23.73 | 31.11 |
CDX83112 | Canola | nucleus | 30.79 | 30.97 |
Bra029992.1-P | Field mustard | nucleus | 30.79 | 30.97 |
Solyc04g078470.2.1 | Tomato | nucleus | 29.38 | 30.95 |
CDY02095 | Canola | nucleus | 28.53 | 30.79 |
Bra012909.1-P | Field mustard | nucleus | 28.53 | 30.79 |
KRH28424 | Soybean | nucleus | 29.1 | 30.75 |
KRH04529 | Soybean | nucleus | 32.2 | 30.73 |
PGSC0003DMT400066557 | Potato | nucleus | 31.07 | 30.73 |
CDX68573 | Canola | nucleus | 30.51 | 30.68 |
Solyc02g064860.1.1 | Tomato | nucleus | 20.34 | 30.64 |
Solyc02g064910.1.1 | Tomato | nucleus | 20.34 | 30.64 |
PGSC0003DMT400068629 | Potato | cytosol | 20.62 | 30.42 |
CDY23022 | Canola | nucleus | 28.25 | 30.4 |
Solyc02g064900.1.1 | Tomato | nucleus | 29.66 | 30.35 |
Bra036051.1-P | Field mustard | nucleus | 30.23 | 30.31 |
CDY30607 | Canola | nucleus | 30.23 | 30.31 |
Solyc01g107730.2.1 | Tomato | nucleus | 31.07 | 30.22 |
CDY57741 | Canola | nucleus | 31.07 | 30.14 |
CDX72453 | Canola | nucleus | 30.51 | 30.0 |
AT3G50070.1 | Thale cress | nucleus | 30.51 | 29.92 |
CDX76265 | Canola | nucleus | 30.79 | 29.86 |
CDY17742 | Canola | nucleus | 29.94 | 29.86 |
CDY49278 | Canola | nucleus | 31.07 | 29.81 |
Solyc02g092980.2.1 | Tomato | nucleus | 30.23 | 29.8 |
KRH57973 | Soybean | nucleus | 32.2 | 29.77 |
Bra012146.1-P | Field mustard | nucleus | 29.66 | 29.66 |
CDY01425 | Canola | nucleus | 29.66 | 29.66 |
Bra017629.1-P | Field mustard | nucleus | 30.79 | 29.62 |
CDY12825 | Canola | nucleus | 29.94 | 29.61 |
KRH61348 | Soybean | nucleus | 29.1 | 29.51 |
PGSC0003DMT400064307 | Potato | nucleus | 30.23 | 29.48 |
CDY69708 | Canola | nucleus | 31.07 | 29.41 |
Bra034612.1-P | Field mustard | nucleus | 30.51 | 29.35 |
KRH77050 | Soybean | nucleus, plastid | 27.68 | 29.34 |
CDX75405 | Canola | nucleus | 30.79 | 29.22 |
Bra011501.1-P | Field mustard | nucleus | 30.79 | 29.22 |
PGSC0003DMT400031329 | Potato | nucleus | 26.55 | 29.19 |
CDY30606 | Canola | cytosol, nucleus, plastid | 14.12 | 29.07 |
KRH52038 | Soybean | nucleus | 29.66 | 29.01 |
AT4G34160.1 | Thale cress | nucleus | 30.79 | 28.99 |
TraesCS5B01G075000.1 | Wheat | nucleus | 28.53 | 28.69 |
KRG90996 | Soybean | nucleus | 31.64 | 28.5 |
KRH35760 | Soybean | nucleus | 31.92 | 28.11 |
PGSC0003DMT400011487 | Potato | nucleus | 14.41 | 27.72 |
TraesCS5B01G243900.1 | Wheat | nucleus | 27.68 | 27.61 |
TraesCS5B01G244100.1 | Wheat | nucleus | 27.68 | 27.22 |
TraesCS5B01G199100.1 | Wheat | nucleus | 24.58 | 27.19 |
PGSC0003DMT400068627 | Potato | nucleus | 23.45 | 26.95 |
TraesCS4B01G257900.1 | Wheat | cytosol | 24.86 | 26.67 |
AT5G67260.2 | Thale cress | nucleus | 30.23 | 26.49 |
TraesCS4B01G080500.1 | Wheat | nucleus | 24.86 | 26.19 |
TraesCS2B01G190700.1 | Wheat | nucleus | 25.42 | 26.16 |
TraesCS6B01G345300.1 | Wheat | plastid | 25.71 | 25.78 |
TraesCS4B01G140400.1 | Wheat | cytosol, nucleus, plastid | 23.45 | 25.0 |
VIT_00s0194g00280.t01 | Wine grape | mitochondrion | 19.49 | 24.21 |
TraesCS2B01G234800.1 | Wheat | cytosol, nucleus, plasma membrane | 19.21 | 19.94 |
Protein Annotations
EnsemblPlants:TraesCS5B01G158400.1 | EnsemblPlantsGene:TraesCS5B01G158400 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
PANTHER:PTHR10177 | PANTHER:PTHR10177:SF342 | PFAM:PF00134 | SEG:seg | SMART:SM00385 | SUPFAM:SSF47954 |
MapMan:13.1.1.1.4 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:292001861..292003133
Molecular Weight (calculated)
37492.4 Da
IEP (calculated)
4.559
GRAVY (calculated)
0.056
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFAALFVDS LYCPEEHHDL FQEPAEEQWP EQQPPVALDD DLPALFEVFR GKEEVLLQEG GDGYGGDARR QAAVGWATRA AARLGFSALT AALAAAYLDR
101: CFLSGGVLRL GDQPWMARLA AVACVALAAK VEETRVPVLL DLQLCAAESA GDADVFDAKT VRRMELLVLS ALAWRMHPVT PFSFLHPVLA AARLRQCESV
201: LLAVMPDWSW PRYRPSAWAA AALLATAGYG SGDGDAELLA LINAPEDEVA ECVKILSGEA AAGFMGFGGD NKRKRAAAGL HSPPLSPIGV IGAAAYFSCE
301: SSSSSADSRS GAAAAWPGSV SVSSSPEPPG RPLKRATATA LMLPPDEESR DAWR
101: CFLSGGVLRL GDQPWMARLA AVACVALAAK VEETRVPVLL DLQLCAAESA GDADVFDAKT VRRMELLVLS ALAWRMHPVT PFSFLHPVLA AARLRQCESV
201: LLAVMPDWSW PRYRPSAWAA AALLATAGYG SGDGDAELLA LINAPEDEVA ECVKILSGEA AAGFMGFGGD NKRKRAAAGL HSPPLSPIGV IGAAAYFSCE
301: SSSSSADSRS GAAAAWPGSV SVSSSPEPPG RPLKRATATA LMLPPDEESR DAWR
001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP
Arabidopsis Description
CYCD3-1Cyclin-D3-1 [Source:UniProtKB/Swiss-Prot;Acc:P42753]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.