Factsheet for PGSC0003DMT400064307

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001218
PGSC0003DMT400008515
PGSC0003DMT400014299
PGSC0003DMT400017807
PGSC0003DMT400018062
PGSC0003DMT400032809
PGSC0003DMT400048460
PGSC0003DMT400056799
PGSC0003DMT400062212
PGSC0003DMT400077428
PGSC0003DMT400080042

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50070.1	PGSC0003DMT400014299	AT1G52730.1	20706207
AT3G50070.1	PGSC0003DMT400001218	AT2G27970.1	20706207
AT3G50070.1	PGSC0003DMT400048460	AT2G27970.1	20706207
AT3G50070.1	PGSC0003DMT400077428	AT3G48750.1	20706207
AT3G50070.1	PGSC0003DMT400018062	AT3G60750.1	20706207
AT3G50070.1	PGSC0003DMT400056799	AT3G60750.1	20706207
AT3G50070.1	PGSC0003DMT400080042	AT4G09320.1	20706207
AT3G50070.1	PGSC0003DMT400062212	AT4G24820.1	20706207
AT3G50070.1	PGSC0003DMT400008515	AT5G06110.1	20706207
AT3G50070.1	PGSC0003DMT400017807	AT5G40460.1	20706207
AT3G50070.1	PGSC0003DMT400032809	AT5G40460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g092980.2.1	Tomato	nucleus	95.04	96.1
PGSC0003DMT400031329	Potato	nucleus	78.79	88.82
PGSC0003DMT400011487	Potato	nucleus	34.71	68.48
PGSC0003DMT400068629	Potato	cytosol	43.53	65.83
PGSC0003DMT400068627	Potato	nucleus	54.82	64.61
PGSC0003DMT400066557	Potato	nucleus	49.86	50.56
Bra029992.1-P	Field mustard	nucleus	47.38	48.86
CDX68573	Canola	nucleus	47.38	48.86
CDX83112	Canola	nucleus	47.38	48.86
KRH04529	Soybean	nucleus	49.86	48.79
KRH57973	Soybean	nucleus	51.24	48.56
AT3G50070.1	Thale cress	nucleus	48.21	48.48
CDY02095	Canola	nucleus	43.8	48.48
Bra012909.1-P	Field mustard	nucleus	43.8	48.48
PGSC0003DMT400039904	Potato	nucleus	42.7	48.14
CDY12825	Canola	nucleus	47.38	48.04
PGSC0003DMT400020648	Potato	nucleus	43.8	47.89
CDY01425	Canola	nucleus	46.56	47.74
CDY23022	Canola	nucleus	43.25	47.72
KRH77050	Soybean	nucleus, plastid	43.53	47.31
Bra012146.1-P	Field mustard	nucleus	45.45	46.61
KRH28424	Soybean	nucleus	42.98	46.57
CDY30607	Canola	nucleus	45.18	46.46
Bra036051.1-P	Field mustard	nucleus	44.9	46.18
CDY17742	Canola	nucleus	44.35	45.35
AT5G67260.2	Thale cress	nucleus	49.04	44.06
CDY30606	Canola	cytosol, nucleus, plastid	20.66	43.6
PGSC0003DMT400033588	Potato	nucleus	35.81	36.52
PGSC0003DMT400037827	Potato	nucleus	30.58	32.27
GSMUA_Achr1P09780_001	Banana	cytosol	34.16	31.96
PGSC0003DMT400088718	Potato	nucleus	27.27	31.94
GSMUA_Achr3P13140_001	Banana	nucleus	35.26	31.45
GSMUA_Achr2P05260_001	Banana	nucleus	29.75	31.3
GSMUA_Achr4P20220_001	Banana	nucleus	31.13	31.22
GSMUA_AchrUn_...	Banana	cytosol	26.72	30.6
HORVU5Hr1G050270.8	Barley	cytosol	29.48	30.48
TraesCS5B01G158400.1	Wheat	cytosol	29.48	30.23
TraesCS5A01G161000.1	Wheat	cytosol	29.48	30.23
TraesCS5D01G165900.1	Wheat	cytosol	29.2	29.94
GSMUA_Achr3P01010_001	Banana	nucleus	32.78	29.24
Os09t0111100-01	Rice	cytosol	28.37	28.3
PGSC0003DMT400040287	Potato	nucleus	25.9	27.98
PGSC0003DMT400041637	Potato	nucleus	29.2	26.9
Zm00001d019696_P001	Maize	cytosol	28.37	26.61
EER96424	Sorghum	cytosol	27.27	25.92
Zm00001d005293_P001	Maize	cytosol	27.55	25.58
PGSC0003DMT400039033	Potato	nucleus	20.39	23.79
PGSC0003DMT400057686	Potato	cytosol, nucleus, plasma membrane	18.18	22.0
PGSC0003DMT400012934	Potato	nucleus	16.8	20.13

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	ProteinID:ABY25838	ProteinID:ABY25838.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EMBL:EU325650	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0016020	GO:GO:0016021	UniProt:M1CC47	PFAM:PF00134	PFAM:PF02984
EnsemblPlantsGene:PGSC0003DMG400024984	PGSC:PGSC0003DMG400024984	EnsemblPlants:PGSC0003DMT400064307	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177
PANTHER:PTHR10177:SF242	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000294E2B0	SEG:seg

Description

D-type cyclin family 3 subgroup 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400024984]

Coordinates

chr2:-:43349553..43351534

Molecular Weight (calculated)

41389.9 Da

IEP (calculated)

4.859

GRAVY (calculated)

-0.090

Length

363 amino acids

Sequence
(BLAST)

001: MVFPLDSQLQ NPISALLDGL YCEEDRFLDD DLGEWSSLDV GNEKWVENVK KTLPLLECDM FWEHDELATL LSKEKEFHLG FESLISDGSL MGVRKEALDW
101: MLRVIGYYGF TATTAVLAVN YFDRFVSGLC FQKDKPWMSQ LAAVACLSIA AKVEETQVPL LLDLQVADSK FVFEAKTIQR MELLVLSTLK WKMNLVTPLS
201: FIDHIMRRFG FMTNLHLDFL KKCERLILDI ITDSRLLHYP PSVIATASMF YVINEIEPNN AMEYQNQLMS VLKVRKDSFE ECNDLILELM GTSCYKLCQS
301: LKRKHHSVPG SPSGVIDAYF SSESSNESWS VASSISSSPE PQYKRNKTQD QRMTLAPLGS NLH

Best Arabidopsis Sequence Match ( AT5G67260.1 )
(BLAST)

001: MALEKEEEAS QNGAFCVLDG LYCEEETGFV EDDLDDDGDL DFLEKSDESV VKFQFLPLLD MFLWDDDEIL SLISKENETN PCFGEQILDG FLVSCRKEAL
101: DWVLRVKSHY GFTSLTAILA VNYFDRFMTS IKLQTDKPWM SQLVAVASLS LAAKVEEIQV PLLLDLQVEE ARYLFEAKTI QRMELLILST LQWRMHPVTP
201: ISFFDHIIRR FGSKWHQQLD FCRKCERLLI SVIADTRFMR YFPSVLATAI MILVFEELKP CDEVEYQSQI TTLLKVNQEK VNECYELLLE HNPSKKRMMN
301: LVDQDSPSGV LDFDDSSNSS WNVSTTASVS SSSSSPEPLL KRRRVQEQQM RLPSINRMFL DVLSSPR

Arabidopsis Description

CYCD3;2CYCLIN D3;2 [Source:TAIR;Acc:AT5G67260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.