Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g054950.1.1 | Tomato | nucleus | 89.07 | 89.35 |
| VIT_12s0134g00500.t01 | Wine grape | nucleus | 54.66 | 57.82 |
| KRH22479 | Soybean | cytosol | 51.45 | 50.63 |
| KRH26876 | Soybean | nucleus | 49.84 | 49.21 |
| KRH25470 | Soybean | nucleus | 50.48 | 48.46 |
| KRH56054 | Soybean | cytosol, nucleus, plasma membrane | 51.13 | 48.33 |
| AT4G03270.1 | Thale cress | nucleus | 44.69 | 46.03 |
| CDY21951 | Canola | nucleus | 44.37 | 45.7 |
| Bra034198.1-P | Field mustard | nucleus | 42.77 | 44.63 |
| CDY22116 | Canola | nucleus | 42.77 | 44.63 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 42.77 | 43.75 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 40.19 | 41.67 |
| CDX90892 | Canola | nucleus | 20.26 | 41.45 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 33.44 | 41.43 |
| PGSC0003DMT400057686 | Potato | cytosol, nucleus, plasma membrane | 38.26 | 39.67 |
| PGSC0003DMT400012934 | Potato | nucleus | 35.69 | 36.63 |
| GSMUA_Achr9P30040_001 | Banana | cytosol, nucleus, peroxisome | 28.3 | 36.36 |
| HORVU0Hr1G003280.5 | Barley | cytosol, mitochondrion, nucleus | 27.97 | 34.66 |
| TraesCS2D01G215000.3 | Wheat | cytosol, nucleus, plasma membrane | 33.44 | 33.23 |
| TraesCS2A01G208300.1 | Wheat | nucleus, peroxisome, plasma membrane | 32.8 | 32.9 |
| Zm00001d021745_P001 | Maize | cytosol, nucleus, plastid | 32.48 | 32.9 |
| EER99528 | Sorghum | cytosol | 32.15 | 31.85 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 42.44 | 31.28 |
| Os07t0556000-01 | Rice | cytosol | 32.15 | 31.25 |
| TraesCS2B01G234800.1 | Wheat | cytosol, nucleus, plasma membrane | 33.12 | 30.21 |
| HORVU7Hr1G117300.3 | Barley | cytosol | 15.11 | 28.48 |
| PGSC0003DMT400088718 | Potato | nucleus | 27.01 | 27.1 |
| PGSC0003DMT400033588 | Potato | nucleus | 30.23 | 26.4 |
| PGSC0003DMT400040287 | Potato | nucleus | 27.33 | 25.3 |
| PGSC0003DMT400037827 | Potato | nucleus | 26.69 | 24.13 |
| PGSC0003DMT400066557 | Potato | nucleus | 25.08 | 21.79 |
| PGSC0003DMT400020648 | Potato | nucleus | 23.15 | 21.69 |
| PGSC0003DMT400039904 | Potato | nucleus | 22.19 | 21.43 |
| PGSC0003DMT400068629 | Potato | cytosol | 16.4 | 21.25 |
| PGSC0003DMT400031329 | Potato | nucleus | 21.86 | 21.12 |
| PGSC0003DMT400064307 | Potato | nucleus | 23.79 | 20.39 |
| PGSC0003DMT400041637 | Potato | nucleus | 25.4 | 20.05 |
| PGSC0003DMT400011487 | Potato | nucleus | 11.25 | 19.02 |
| PGSC0003DMT400068627 | Potato | nucleus | 18.65 | 18.83 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:102586594 | MapMan:13.1.1.1.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_D_plant | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051726 | UniProt:M1B7P1 | PFAM:PF00134 |
| PFAM:PF02984 | EnsemblPlantsGene:PGSC0003DMG400015088 | PGSC:PGSC0003DMG400015088 | EnsemblPlants:PGSC0003DMT400039033 | PIRSF:PIRSF001771 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF188 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000295193B | RefSeq:XP_006366940.1 |
| SEG:seg | : | : | : | : | : |
Description
D6-type cyclin [Source:PGSC_GENE;Acc:PGSC0003DMG400015088]
Coordinates
chr7:-:48103028..48107371
Molecular Weight (calculated)
35541.7 Da
IEP (calculated)
4.748
GRAVY (calculated)
-0.033
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFDLENPLP FSHDEDTISP LFNIETHHMP SKTYLQILIN SDFLINIRES TISIILQISQ PFDSPSLSYL AINYLDRFLS FHSLPDAKPW ILKLIAVSCV
101: SLAFKMKKTE YSVTDIQQDG GTIFDIETIK RMELLILGGL KWRMRSITAF AFINFFVSLF KFKDLPLQQA LKDRATEIIF TAQNEIKILQ FKPSIISASA
201: LLSASHELFP LQFSCYKTAI LNCSYVHEDD LLSCYDVMQE IAKKEYESIL EMVSSTSTPV NVLDVQMSWS SDNEPIEEDS SVNAFSSNSR GRQDNLTKRR
301: KIITTIIDDN T
101: SLAFKMKKTE YSVTDIQQDG GTIFDIETIK RMELLILGGL KWRMRSITAF AFINFFVSLF KFKDLPLQQA LKDRATEIIF TAQNEIKILQ FKPSIISASA
201: LLSASHELFP LQFSCYKTAI LNCSYVHEDD LLSCYDVMQE IAKKEYESIL EMVSSTSTPV NVLDVQMSWS SDNEPIEEDS SVNAFSSNSR GRQDNLTKRR
301: KIITTIIDDN T
001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY
Arabidopsis Description
CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.