Factsheet for VIT_12s0134g00500.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g02780.t01
VIT_05s0029g00040.t01
VIT_06s0061g00810.t01
VIT_08s0056g00210.t01
VIT_15s0045g00310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03270.1	VIT_06s0061g00810.t01	AT2G27960.1	20706207
AT4G03270.1	VIT_05s0029g00040.t01	AT2G32710.1	20706207
AT4G03270.1	VIT_04s0008g02780.t01	AT3G12280.1	22921914
AT4G03270.1	VIT_15s0045g00310.t01	AT3G48750.1	20706207
AT4G03270.1	VIT_08s0056g00210.t01	AT3G54180.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039033	Potato	nucleus	57.82	54.66
Solyc07g054950.1.1	Tomato	nucleus	56.46	53.55
KRH22479	Soybean	cytosol	57.48	53.48
KRH26876	Soybean	nucleus	56.46	52.7
GSMUA_Achr6P24270_001	Banana	nucleus	51.7	50.0
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	42.52	49.8
KRH25470	Soybean	nucleus	53.74	48.77
KRH56054	Soybean	cytosol, nucleus, plasma membrane	54.42	48.63
AT4G03270.1	Thale cress	nucleus	48.98	47.68
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	47.96	47.0
VIT_00s0203g00160.t01	Wine grape	cytosol	50.0	46.52
Bra034198.1-P	Field mustard	nucleus	45.58	44.97
CDY22116	Canola	nucleus	45.58	44.97
CDY21951	Canola	nucleus	45.92	44.7
CDX90892	Canola	nucleus	22.79	44.08
GSMUA_Achr9P30040_001	Banana	cytosol, nucleus, peroxisome	32.65	39.67
Zm00001d021745_P001	Maize	cytosol, nucleus, plastid	39.8	38.11
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	39.46	37.42
EER99528	Sorghum	cytosol	39.8	37.26
TraesCS2D01G215000.3	Wheat	cytosol, nucleus, plasma membrane	39.46	37.06
HORVU0Hr1G003280.5	Barley	cytosol, mitochondrion, nucleus	31.63	37.05
Os07t0556000-01	Rice	cytosol	39.8	36.56
GSMUA_Achr9P12120_001	Banana	nucleus	52.38	36.49
TraesCS2B01G234800.1	Wheat	cytosol, nucleus, plasma membrane	40.14	34.6
HORVU7Hr1G117300.3	Barley	cytosol	17.35	30.91
VIT_01s0026g00710.t01	Wine grape	nucleus	33.33	30.25
VIT_18s0001g07220.t01	Wine grape	nucleus	35.71	29.58
VIT_00s0199g00210.t01	Wine grape	nucleus	32.65	27.2
VIT_18s0001g09160.t01	Wine grape	nucleus	28.57	26.5
VIT_00s0322g00010.t01	Wine grape	nucleus	27.21	26.23
VIT_03s0091g01060.t01	Wine grape	nucleus	29.59	24.58
VIT_07s0129g01100.t01	Wine grape	nucleus	25.51	24.27
VIT_07s0129g00200.t01	Wine grape	nucleus	25.85	23.03
VIT_00s0194g00280.t01	Wine grape	mitochondrion	21.77	22.46
VIT_08s0007g00790.t01	Wine grape	nucleus	25.17	21.89
VIT_18s0001g09920.t01	Wine grape	nucleus	26.87	21.24
VIT_03s0180g00040.t01	Wine grape	nucleus	27.21	20.73

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100251144	wikigene:100251144	MapMan:13.1.1.1.4	ProteinID:CCB44750	ProteinID:CCB44750.1
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_D_plant	InterPro:Cyclin_N	UniProt:F6GXR4
EMBL:FN594966	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007049
GO:GO:0008150	GO:GO:0009987	GO:GO:0051726	EntrezGene:LOC100251144	wikigene:LOC100251144	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF188	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	TIGR:TC70505	UniParc:UPI00015CAE71	ArrayExpress:VIT_12s0134g00500	EnsemblPlantsGene:VIT_12s0134g00500	EnsemblPlants:VIT_12s0134g00500.t01
unigene:Vvi.17450	RefSeq:XP_002276869	RefSeq:XP_002276869.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:8133213..8135180

Molecular Weight (calculated)

33331.6 Da

IEP (calculated)

6.615

GRAVY (calculated)

0.102

Length

294 amino acids

Sequence
(BLAST)

001: MEFDLENPLT SSQDLHSHAV ASLFQAENHH MPSIDYCGSL DSVDCDVSFR RQAISSILQM SSSFDPFLSY LAINYLDRFL SRSEMPSEKP WILRLLAVSC
101: VSLAAKMKKT EFSLADFQGE GGFIFDSETI MRMEILVLGA LKWRMRSVTP FSFISFFISL FKLKDPPLLE ALKARVIEII LKSQKEIKLL QFKPSIIAAS
201: TLLYACHELF PLQFPCFMTA ISNCPYVNKE KMLCCYSAVR EMEIKEFDSL YGVVSSSSSP VNVLDRHCLS SESEKSHTMG AESDVKRRKI SVFL

Best Arabidopsis Sequence Match ( AT4G03270.1 )
(BLAST)

001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY

Arabidopsis Description

CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.