Factsheet for VIT_00s0322g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58137	Soybean	nucleus	47.54	45.6
KRH04404	Soybean	vacuole	49.18	44.12
VIT_03s0091g01060.t01	Wine grape	nucleus	43.61	37.57
VIT_01s0026g00710.t01	Wine grape	nucleus	34.43	32.41
VIT_18s0001g07220.t01	Wine grape	nucleus	35.08	30.14
VIT_00s0199g00210.t01	Wine grape	nucleus	32.46	28.05
VIT_12s0134g00500.t01	Wine grape	nucleus	26.23	27.21
VIT_07s0129g01100.t01	Wine grape	nucleus	27.21	26.86
VIT_18s0001g09160.t01	Wine grape	nucleus	26.56	25.55
VIT_07s0129g00200.t01	Wine grape	nucleus	26.23	24.24
VIT_00s0194g00280.t01	Wine grape	mitochondrion	22.62	24.21
VIT_18s0001g09920.t01	Wine grape	nucleus	28.2	23.12
VIT_03s0180g00040.t01	Wine grape	nucleus	29.18	23.06
VIT_00s0203g00160.t01	Wine grape	cytosol	23.61	22.78
VIT_08s0007g00790.t01	Wine grape	nucleus	24.26	21.89

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100249175	wikigene:100249175	MapMan:13.1.1.1.4	ProteinID:CBI25833	ProteinID:CBI25833.3
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	UniProt:D7T5P9	EMBL:FN595543
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EntrezGene:LOC100249175	wikigene:LOC100249175
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF227
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0001BE2DB4	ArrayExpress:VIT_00s0322g00010	EnsemblPlantsGene:VIT_00s0322g00010	EnsemblPlants:VIT_00s0322g00010.t01
RefSeq:XP_003635232	RefSeq:XP_003635232.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:+:23190305..23191587

Molecular Weight (calculated)

34468.5 Da

IEP (calculated)

5.040

GRAVY (calculated)

-0.029

Length

305 amino acids

Sequence
(BLAST)

001: MSLSPAYSAV NLYCSEVADE VVDLSDRIPF PNLDSSTDDE SFILGLFDSE LDQMLCSERL PVLPEGVRAR QDAVNWMLKV HSHYNFRPET AYLSVTYLDR
101: FLCTYDLPQG KEWSLQLLSV ACIAVAAKME ERSVPLLLDL QVMEPRFLFT AMTVQQMELL VMAVLKWRLS TVTPFSFVNY FISKFPCFSS QFHSSSNVSD
201: LILASCRVTD HLDFLPSSIA AASLLWVAGK NVDDQILEHF HKRVNKEMVK RCHYLIKQSM CSMVRVKRQR LEPGPPSPDG VLDADISKNC DVLKCGGEDS
301: KSSQD

Best Arabidopsis Sequence Match ( AT1G70210.1 )
(BLAST)

001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN

Arabidopsis Description

CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.