Factsheet for VIT_00s0194g00280.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0129g01100.t01	Wine grape	nucleus	39.65	36.57
VIT_03s0180g00040.t01	Wine grape	nucleus	44.91	33.16
KRH05626	Soybean	cytosol	23.16	30.7
VIT_18s0001g09920.t01	Wine grape	nucleus	38.25	29.3
KRH15412	Soybean	cytosol	27.37	28.89
VIT_18s0001g07220.t01	Wine grape	nucleus	32.28	25.92
GSMUA_AchrUn_...	Banana	cytosol	26.32	23.66
VIT_03s0091g01060.t01	Wine grape	nucleus	28.77	23.16
VIT_01s0026g00710.t01	Wine grape	nucleus	26.32	23.15
VIT_00s0199g00210.t01	Wine grape	nucleus	28.42	22.95
VIT_00s0322g00010.t01	Wine grape	nucleus	24.21	22.62
VIT_18s0001g09160.t01	Wine grape	nucleus	24.91	22.4
GSMUA_Achr4P20220_001	Banana	nucleus	28.42	22.38
GSMUA_Achr2P05260_001	Banana	nucleus	26.67	22.03
VIT_12s0134g00500.t01	Wine grape	nucleus	22.46	21.77
GSMUA_Achr3P13140_001	Banana	nucleus	30.53	21.38
GSMUA_Achr1P09780_001	Banana	cytosol	28.77	21.13
HORVU5Hr1G050270.8	Barley	cytosol	24.56	19.94
VIT_00s0203g00160.t01	Wine grape	cytosol	22.11	19.94
Os09t0111100-01	Rice	cytosol	25.26	19.78
TraesCS5D01G165900.1	Wheat	cytosol	24.56	19.77
TraesCS5A01G161000.1	Wheat	cytosol	24.56	19.77
GSMUA_Achr3P01010_001	Banana	nucleus	28.07	19.66
TraesCS5B01G158400.1	Wheat	cytosol	24.21	19.49
VIT_07s0129g00200.t01	Wine grape	nucleus	22.46	19.39
VIT_08s0007g00790.t01	Wine grape	nucleus	22.81	19.23
Zm00001d005293_P001	Maize	cytosol	24.56	17.9
EER96424	Sorghum	cytosol	23.86	17.8
Zm00001d019696_P001	Maize	cytosol	23.86	17.57

Protein Annotations

ArrayExpress:VIT_00s0194g00280	EMBL:FN595527	EnsemblPlants:VIT_00s0194g00280.t01	EnsemblPlantsGene:VIT_00s0194g00280	Gene3D:1.10.472.10	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_N	ncoils:Coil	PANTHER:PTHR10177	PANTHER:PTHR10177:SF242	PFAM:PF00134
PIRSF:PIRSF001771	ProteinID:CCB50059	ProteinID:CCB50059.1	ScanProsite:PS00292	SMART:SM00385	SUPFAM:SSF47954
UniParc:UPI0002109B0B	UniProt:F6HCW4	MapMan:13.1.1.1.4	:	:	:

Description

No Description!

Coordinates

chrUn:+:10736937..10738089

Molecular Weight (calculated)

31582.8 Da

IEP (calculated)

4.448

GRAVY (calculated)

0.035

Length

285 amino acids

Sequence
(BLAST)

001: MGGALVIARL QAVEWMMKVN ARYGFSAVTA FLAINYLDKL ISSLHSQRDK PWMIQLAAVT CLSLAAKVEE TQVSLLLGLQ VEDNEYAFEA KTIQRMDFLV
101: LSTFQWKMNP VTPLSFIDLI IRRLGLKTHR HWELLHLCKC WYVDEQVRTE ANDAVASDSQ DLTIEGKIET APADDLVKSD FTLSERISCD TKSAPVDEVY
201: NSVLETTPVG DSVKPYVSLS EEVIFDAKGV PGEEAYKSTV ETAFVVDLVK PEMSVSGEVI CVTDSAPLGN SVADFVSDTN TAMKR

Best Arabidopsis Sequence Match ( AT4G34160.1 )
(BLAST)

001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP

Arabidopsis Description

CYCD3-1Cyclin-D3-1 [Source:UniProtKB/Swiss-Prot;Acc:P42753]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.