Factsheet for GSMUA_Achr4P20220_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P09430_001
GSMUA_Achr1P19800_001
GSMUA_Achr2P05590_001
GSMUA_Achr2P11710_001
GSMUA_Achr2P11750_001
GSMUA_Achr2P16400_001
GSMUA_Achr2P17000_001
GSMUA_Achr2P22370_001
GSMUA_Achr3P03700_001
GSMUA_Achr3P11490_001
GSMUA_Achr3P11500_001
GSMUA_Achr3P11550_001
GSMUA_Achr5P18300_001
GSMUA_Achr6P00680_001
GSMUA_Achr6P12080_001
GSMUA_Achr6P17910_001
GSMUA_Achr8P15010_001
GSMUA_Achr8P16370_001
GSMUA_Achr9P12350_001
GSMUA_Achr9P20740_001
GSMUA_Achr9P27040_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50070.1	GSMUA_Achr2P17000_001	AT1G52730.1	20706207
AT3G50070.1	GSMUA_Achr6P00680_001	AT1G52730.1	20706207
AT3G50070.1	GSMUA_Achr1P09430_001	AT1G55820.1	20706207
AT3G50070.1	GSMUA_Achr2P11710_001	AT2G27970.1	20706207
AT3G50070.1	GSMUA_Achr2P11750_001	AT2G27970.1	20706207
AT3G50070.1	GSMUA_Achr11P...	AT3G48750.1	20706207
AT3G50070.1	GSMUA_Achr1P19800_001	AT3G60750.1	20706207
AT3G50070.1	GSMUA_Achr3P11490_001	AT3G60750.1	20706207
AT3G50070.1	GSMUA_Achr3P11500_001	AT3G60750.1	20706207
AT3G50070.1	GSMUA_Achr3P11550_001	AT3G60750.1	20706207
AT3G50070.1	GSMUA_Achr9P20740_001	AT3G60750.1	20706207
AT3G50070.1	GSMUA_AchrUn_...	AT3G60750.1	20706207
AT3G50070.1	GSMUA_AchrUn_...	AT3G60750.1	20706207
AT3G50070.1	GSMUA_Achr11P...	AT4G09320.1	20706207
AT3G50070.1	GSMUA_Achr5P18300_001	AT4G09320.1	20706207
AT3G50070.1	GSMUA_Achr8P15010_001	AT4G09320.1	20706207
AT3G50070.1	GSMUA_Achr10P...	AT4G24820.1	20706207
AT3G50070.1	GSMUA_Achr6P12080_001	AT4G24820.1	20706207
AT3G50070.1	GSMUA_Achr8P16370_001	AT4G24820.1	20706207
AT3G50070.1	GSMUA_Achr2P05590_001	AT5G06110.1	20706207
AT4G34160.1	GSMUA_Achr11P...	AT1G76540.1	12857813
AT4G34160.1	GSMUA_Achr3P03700_001	AT1G76540.1	12857813
AT4G34160.1	GSMUA_Achr9P12350_001	AT1G76540.1	12857813
AT4G34160.1	GSMUA_Achr2P11710_001	AT2G27970.1	17426018
AT4G34160.1	GSMUA_Achr2P11750_001	AT2G27970.1	17426018
AT4G34160.1	GSMUA_Achr2P11710_001	AT2G27970.1	20706207
AT4G34160.1	GSMUA_Achr2P11750_001	AT2G27970.1	20706207
AT4G34160.1	GSMUA_Achr10P...	AT3G19150.1	17426018
AT4G34160.1	GSMUA_Achr10P...	AT3G19150.1	17426018
AT4G34160.1	GSMUA_Achr2P22370_001	AT3G19150.1	17426018
AT4G34160.1	GSMUA_Achr9P27040_001	AT3G19150.1	17426018
AT4G34160.1	GSMUA_Achr10P...	AT3G19150.1	20706207
AT4G34160.1	GSMUA_Achr10P...	AT3G19150.1	20706207
AT4G34160.1	GSMUA_Achr2P22370_001	AT3G19150.1	20706207
AT4G34160.1	GSMUA_Achr9P27040_001	AT3G19150.1	20706207
AT4G34160.1	GSMUA_Achr11P...	AT3G48750.1	11096103
AT4G34160.1	GSMUA_Achr11P...	AT3G48750.1	16517759
AT4G34160.1	GSMUA_Achr11P...	AT3G48750.1	16766674
AT4G34160.1	GSMUA_Achr11P...	AT3G48750.1	17426018
AT4G34160.1	GSMUA_Achr11P...	AT3G48750.1	20706207
AT4G34160.1	GSMUA_Achr2P16400_001	AT5G02220.1	17426018
AT4G34160.1	GSMUA_Achr6P17910_001	AT5G02220.1	17426018
AT4G34160.1	GSMUA_Achr2P16400_001	AT5G02220.1	20706207
AT4G34160.1	GSMUA_Achr6P17910_001	AT5G02220.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P13140_001	Banana	nucleus	71.55	63.64
GSMUA_Achr3P01010_001	Banana	nucleus	62.71	55.77
GSMUA_Achr1P09780_001	Banana	cytosol	59.39	55.41
GSMUA_Achr2P05260_001	Banana	nucleus	49.72	52.17
GSMUA_AchrUn_...	Banana	cytosol	43.09	49.21
HORVU5Hr1G050270.8	Barley	cytosol	39.5	40.74
TraesCS5D01G165900.1	Wheat	cytosol	39.78	40.68
TraesCS5A01G161000.1	Wheat	cytosol	39.5	40.4
TraesCS5B01G158400.1	Wheat	cytosol	39.23	40.11
Zm00001d005293_P001	Maize	cytosol	41.99	38.87
VIT_07s0129g01100.t01	Wine grape	nucleus	33.15	38.84
Zm00001d019696_P001	Maize	cytosol	41.44	38.76
Os09t0111100-01	Rice	cytosol	38.95	38.74
EER96424	Sorghum	cytosol	40.06	37.96
PGSC0003DMT400039904	Potato	nucleus	32.32	36.34
KRH05626	Soybean	cytosol	21.27	35.81
Solyc12g088650.1.1	Tomato	nucleus	31.49	35.08
PGSC0003DMT400020648	Potato	nucleus	31.77	34.64
Solyc04g078470.2.1	Tomato	nucleus	31.77	34.23
KRH15412	Soybean	cytosol	25.41	34.07
Solyc01g107730.2.1	Tomato	nucleus	33.43	33.24
PGSC0003DMT400066557	Potato	nucleus	32.87	33.24
VIT_03s0180g00040.t01	Wine grape	nucleus	35.36	33.16
KRH61348	Soybean	nucleus	31.77	32.95
GSMUA_Achr6P02210_001	Banana	plastid	22.65	32.93
VIT_18s0001g09920.t01	Wine grape	nucleus	33.43	32.53
CDY30607	Canola	nucleus	31.49	32.29
Bra017629.1-P	Field mustard	nucleus	32.6	32.07
Solyc02g092980.2.1	Tomato	nucleus	31.77	32.03
CDX72453	Canola	nucleus	31.77	31.94
CDY01425	Canola	nucleus	31.22	31.92
CDY12825	Canola	nucleus	31.49	31.84
CDY17742	Canola	nucleus	31.22	31.83
CDX76265	Canola	nucleus	32.04	31.78
CDY57741	Canola	nucleus	32.04	31.78
Bra036051.1-P	Field mustard	nucleus	30.94	31.73
CDY49278	Canola	nucleus	32.32	31.71
PGSC0003DMT400068629	Potato	cytosol	20.99	31.67
KRH28424	Soybean	nucleus	29.28	31.64
Bra012146.1-P	Field mustard	nucleus	30.94	31.64
Bra029992.1-P	Field mustard	nucleus	30.39	31.25
CDX83112	Canola	nucleus	30.39	31.25
PGSC0003DMT400064307	Potato	nucleus	31.22	31.13
Bra012909.1-P	Field mustard	nucleus	28.18	31.1
CDY02095	Canola	nucleus	28.18	31.1
KRH57973	Soybean	nucleus	32.87	31.07
KRH04529	Soybean	nucleus	31.77	31.0
CDX68573	Canola	nucleus	30.11	30.97
KRH52038	Soybean	nucleus	30.94	30.94
KRH77050	Soybean	nucleus, plastid	28.45	30.84
Bra011501.1-P	Field mustard	nucleus	31.77	30.83
CDX75405	Canola	nucleus	31.77	30.83
CDY30606	Canola	cytosol, nucleus, plastid	14.64	30.81
PGSC0003DMT400031329	Potato	nucleus	27.35	30.75
Bra034612.1-P	Field mustard	nucleus	31.22	30.71
Solyc02g064900.1.1	Tomato	nucleus	29.28	30.64
AT4G34160.1	Thale cress	nucleus	31.77	30.59
CDY69708	Canola	nucleus	31.49	30.48
CDY23022	Canola	nucleus	27.62	30.4
KRG90996	Soybean	nucleus	32.87	30.28
AT3G50070.1	Thale cress	nucleus	29.28	29.36
KRH35760	Soybean	nucleus	32.32	29.1
GSMUA_Achr10P...	Banana	nucleus	25.69	28.97
VIT_00s0194g00280.t01	Wine grape	mitochondrion	22.38	28.42
GSMUA_Achr9P15070_001	Banana	nucleus	27.35	28.29
AT5G67260.2	Thale cress	nucleus	31.49	28.22
Solyc02g064910.1.1	Tomato	nucleus	18.23	28.09
Solyc02g064860.1.1	Tomato	nucleus	18.23	28.09
PGSC0003DMT400011487	Potato	nucleus	13.81	27.17
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	22.38	27.0
GSMUA_Achr6P24270_001	Banana	nucleus	22.65	26.97
GSMUA_Achr3P06730_001	Banana	nucleus	25.69	26.8
GSMUA_Achr9P28180_001	Banana	nucleus	22.38	26.73
GSMUA_Achr5P17920_001	Banana	nucleus	25.41	26.59
GSMUA_Achr7P19040_001	Banana	cytosol, endoplasmic reticulum, nucleus	26.24	26.54
GSMUA_Achr10P...	Banana	nucleus	25.97	26.48
GSMUA_Achr10P...	Banana	nucleus	25.14	26.45
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	18.23	26.29
GSMUA_Achr8P23430_001	Banana	nucleus	25.14	26.22
GSMUA_Achr6P07740_001	Banana	nucleus	22.93	26.1
GSMUA_Achr5P22980_001	Banana	nucleus	25.14	26.07
GSMUA_Achr7P12850_001	Banana	nucleus	25.69	25.76
GSMUA_Achr3P06030_001	Banana	cytosol	20.99	25.68
PGSC0003DMT400068627	Potato	nucleus	21.82	25.65
GSMUA_Achr3P21210_001	Banana	nucleus	24.86	25.5
GSMUA_Achr6P10260_001	Banana	cytosol	25.41	25.34
GSMUA_Achr2P22330_001	Banana	nucleus	24.86	25.28
GSMUA_Achr6P16910_001	Banana	cytosol	19.34	25.18
GSMUA_Achr9P30040_001	Banana	cytosol, nucleus, peroxisome	16.57	24.79
GSMUA_Achr10P...	Banana	cytosol	17.13	24.51
GSMUA_Achr7P26100_001	Banana	nucleus	24.31	23.98
GSMUA_Achr1P22570_001	Banana	nucleus	25.14	23.88
GSMUA_Achr6P34040_001	Banana	nucleus	17.4	22.91
GSMUA_Achr4P07110_001	Banana	nucleus	19.89	22.5
GSMUA_Achr10P...	Banana	nucleus	17.68	22.38
GSMUA_Achr7P19980_001	Banana	nucleus	22.1	20.57
GSMUA_Achr9P12120_001	Banana	nucleus	22.1	18.96

Protein Annotations

EnsemblPlants:GSMUA_Achr4P20220_001	EnsemblPlants:GSMUA_Achr4T20220_001	EnsemblPlantsGene:GSMUA_Achr4G20220_001	Gene3D:1.10.472.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
PANTHER:PTHR10177	PANTHER:PTHR10177:SF342	PFAM:PF00134	PFAM:PF02984	SEG:seg	SMART:SM00385
SUPFAM:SSF47954	UniParc:UPI000296A957	UniProt:M0SQI5	MapMan:13.1.1.1.4	:	:

Description

Cyclin d, putative [Source:GMGC_GENE;Acc:GSMUA_Achr4G20220_001]

Coordinates

chr4:-:20923132..20926393

Molecular Weight (calculated)

38880.7 Da

IEP (calculated)

6.972

GRAVY (calculated)

-0.054

Length

362 amino acids

Sequence
(BLAST)

001: MPFKSNITER HVLLGAEAEA EAEEEWTEVL CSLVAKEGEA LPKLVPDGGV GSYLRSARKE AVEWVARAAA RHAFSALTAL LAVNYLDRCF LSCGAADGGL
101: LRLQDDKPWM GRIVAVACLS LAAKVEETRL PLLLDLQVPL PPEAPTEEEG GYVFEPKTIR RMELLVLSVL GWRMNPVTPL SFIHHLLPQL CSKAKIADAD
201: FAAVGIAART RALMRRCEAA LLSVIAGRRW VQYPSSVWAA AALLQATGSG DGGTAVVKSQ EAHRLISLLN TPKEKVGECS QLLLESVGTA IVGHKRKHSS
301: SAFYHHSLPP SPSGVIGSCF SCESSCDSRP MWSSSTSSSP ETPSKKPNRF ADEGARGEGP DS

Best Arabidopsis Sequence Match ( AT3G50070.1 )
(BLAST)

001: MALEEEEESQ NAPFCVLDGL FCEEESEFHE QVDLCDESVE KFPFLNLGLS DHDMLWDDDE LSTLISKQEP CLYDEILDDE FLVLCREKAL DWIFKVKSHY
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R

Arabidopsis Description

CYCD3-3CYCD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VE15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.