Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039904 | Potato | nucleus | 92.92 | 93.79 |
| Solyc04g078470.2.1 | Tomato | nucleus | 65.23 | 63.1 |
| VIT_18s0001g09920.t01 | Wine grape | nucleus | 57.85 | 50.54 |
| KRH61348 | Soybean | nucleus | 52.92 | 49.28 |
| KRH52038 | Soybean | nucleus | 52.92 | 47.51 |
| Solyc01g107730.2.1 | Tomato | nucleus | 51.69 | 46.15 |
| Solyc02g092980.2.1 | Tomato | nucleus | 46.77 | 42.34 |
| Solyc02g064900.1.1 | Tomato | nucleus | 42.46 | 39.88 |
| Solyc02g064910.1.1 | Tomato | nucleus | 27.08 | 37.45 |
| Solyc02g064860.1.1 | Tomato | nucleus | 27.08 | 37.45 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 34.46 | 32.46 |
| TraesCS5B01G158400.1 | Wheat | cytosol | 34.46 | 31.64 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 35.08 | 31.49 |
| TraesCS5A01G161000.1 | Wheat | cytosol | 34.15 | 31.36 |
| TraesCS5D01G165900.1 | Wheat | cytosol | 34.15 | 31.36 |
| HORVU5Hr1G050270.8 | Barley | cytosol | 33.85 | 31.34 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 36.92 | 30.93 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 38.15 | 30.47 |
| Solyc04g076040.2.1 | Tomato | nucleus | 33.23 | 30.42 |
| Solyc11g010460.1.1 | Tomato | cytosol | 28.92 | 30.13 |
| Solyc05g006050.2.1 | Tomato | nucleus | 30.15 | 29.08 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 35.69 | 28.5 |
| Solyc05g051410.2.1 | Tomato | nucleus | 30.15 | 28.49 |
| Solyc12g087900.1.1 | Tomato | nucleus | 27.69 | 28.48 |
| GSMUA_AchrUn_... | Banana | cytosol | 27.69 | 28.39 |
| Os09t0111100-01 | Rice | cytosol | 31.38 | 28.02 |
| Zm00001d019696_P001 | Maize | cytosol | 33.23 | 27.91 |
| Zm00001d005293_P001 | Maize | cytosol | 32.92 | 27.37 |
| EER96424 | Sorghum | cytosol | 32.0 | 27.23 |
| Solyc07g054950.1.1 | Tomato | nucleus | 22.15 | 23.23 |
| Solyc02g079370.2.1 | Tomato | nucleus | 20.92 | 22.9 |
| Solyc03g006670.2.1 | Tomato | nucleus | 19.38 | 20.26 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | ncoils:Coil | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | UniProt:K4DGT6 |
| PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF342 |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | EnsemblPlantsGene:Solyc12g088650.1 | EnsemblPlants:Solyc12g088650.1.1 | UniParc:UPI0002769451 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:63929524..63931945
Molecular Weight (calculated)
37234.7 Da
IEP (calculated)
4.586
GRAVY (calculated)
-0.128
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFVIDSLYC KDETFQVFEV KPKSVTLLNQ DLIWEKEELE SLLSKEEENQ MYNVVINNPF LSVFRSEAIE WILEAVDYHN FSAQTAILAV NYLDRFLFSL
101: QSQNHDDEKQ PWMNQLAAVT CLSLAAKIEE TQVPLLLDLQ VEESRYLFEP KTIQRMEILL LSTLKWKMNP VTPFSFLDYF SRRLGLNDHI CFELLRRCEK
201: VLLSTITDCR FMCYLPSAMA AATMLHVIDK LEPCIGQEYQ EQLFGILGVV KDNVTDCCKL VQEVASNVDF NSNKRKFGAL PGSPMGVMDV SFSSDSSNDS
301: WAVAASVFSS PEPSSKRTRP HEKEK
101: QSQNHDDEKQ PWMNQLAAVT CLSLAAKIEE TQVPLLLDLQ VEESRYLFEP KTIQRMEILL LSTLKWKMNP VTPFSFLDYF SRRLGLNDHI CFELLRRCEK
201: VLLSTITDCR FMCYLPSAMA AATMLHVIDK LEPCIGQEYQ EQLFGILGVV KDNVTDCCKL VQEVASNVDF NSNKRKFGAL PGSPMGVMDV SFSSDSSNDS
301: WAVAASVFSS PEPSSKRTRP HEKEK
001: MALEKEEEAS QNGAFCVLDG LYCEEETGFV EDDLDDDGDL DFLEKSDESV VKFQFLPLLD MFLWDDDEIL SLISKENETN PCFGEQILDG FLVSCRKEAL
101: DWVLRVKSHY GFTSLTAILA VNYFDRFMTS IKLQTDKPWM SQLVAVASLS LAAKVEEIQV PLLLDLQVEE ARYLFEAKTI QRMELLILST LQWRMHPVTP
201: ISFFDHIIRR FGSKWHQQLD FCRKCERLLI SVIADTRFMR YFPSVLATAI MILVFEELKP CDEVEYQSQI TTLLKVNQEK VNECYELLLE HNPSKKRMMN
301: LVDQDSPSGV LDFDDSSNSS WNVSTTASVS SSSSSPEPLL KRRRVQEQQM RLPSINRKDF ETRQRVVQVL VLFLSLKMKK IWWTYMYIEG WIQRQQQLRL
401: ERRR
101: DWVLRVKSHY GFTSLTAILA VNYFDRFMTS IKLQTDKPWM SQLVAVASLS LAAKVEEIQV PLLLDLQVEE ARYLFEAKTI QRMELLILST LQWRMHPVTP
201: ISFFDHIIRR FGSKWHQQLD FCRKCERLLI SVIADTRFMR YFPSVLATAI MILVFEELKP CDEVEYQSQI TTLLKVNQEK VNECYELLLE HNPSKKRMMN
301: LVDQDSPSGV LDFDDSSNSS WNVSTTASVS SSSSSPEPLL KRRRVQEQQM RLPSINRKDF ETRQRVVQVL VLFLSLKMKK IWWTYMYIEG WIQRQQQLRL
401: ERRR
Arabidopsis Description
CYCD3;2CYCLIN D3;2 [Source:TAIR;Acc:AT5G67260]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.