Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g064910.1.1 | Tomato | nucleus | 97.87 | 97.87 |
| Solyc02g064900.1.1 | Tomato | nucleus | 97.45 | 66.19 |
| PGSC0003DMT400068627 | Potato | nucleus | 86.38 | 65.91 |
| PGSC0003DMT400068629 | Potato | cytosol | 60.0 | 58.75 |
| Solyc02g092980.2.1 | Tomato | nucleus | 62.98 | 41.23 |
| PGSC0003DMT400011487 | Potato | nucleus | 30.64 | 39.13 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 27.66 | 37.79 |
| Bra029992.1-P | Field mustard | nucleus | 42.55 | 28.41 |
| CDX83112 | Canola | nucleus | 42.55 | 28.41 |
| CDX68573 | Canola | nucleus | 41.7 | 27.84 |
| AT3G50070.1 | Thale cress | nucleus | 42.13 | 27.42 |
| CDY01425 | Canola | nucleus | 41.28 | 27.4 |
| CDY12825 | Canola | nucleus | 41.7 | 27.37 |
| Bra012146.1-P | Field mustard | nucleus | 40.85 | 27.12 |
| Solyc12g088650.1.1 | Tomato | nucleus | 37.45 | 27.08 |
| CDY02095 | Canola | nucleus | 37.45 | 26.83 |
| Bra012909.1-P | Field mustard | nucleus | 37.45 | 26.83 |
| Solyc04g078470.2.1 | Tomato | nucleus | 37.45 | 26.19 |
| KRH04529 | Soybean | nucleus | 41.28 | 26.15 |
| CDY23022 | Canola | nucleus | 36.6 | 26.14 |
| CDY30607 | Canola | nucleus | 39.15 | 26.06 |
| Bra036051.1-P | Field mustard | nucleus | 38.72 | 25.78 |
| CDY17742 | Canola | nucleus | 38.72 | 25.63 |
| KRH57973 | Soybean | nucleus | 41.7 | 25.59 |
| Solyc01g107730.2.1 | Tomato | nucleus | 39.15 | 25.27 |
| AT5G67260.2 | Thale cress | nucleus | 42.98 | 25.0 |
| KRH77050 | Soybean | nucleus, plastid | 35.32 | 24.85 |
| KRH28424 | Soybean | nucleus | 34.04 | 23.88 |
| Solyc04g076040.2.1 | Tomato | nucleus | 31.06 | 20.56 |
| TraesCS5B01G158400.1 | Wheat | cytosol | 30.64 | 20.34 |
| HORVU5Hr1G050270.8 | Barley | cytosol | 29.79 | 19.94 |
| TraesCS5D01G165900.1 | Wheat | cytosol | 29.79 | 19.77 |
| TraesCS5A01G161000.1 | Wheat | cytosol | 29.79 | 19.77 |
| Solyc12g087900.1.1 | Tomato | nucleus | 26.38 | 19.62 |
| Solyc11g010460.1.1 | Tomato | cytosol | 25.96 | 19.55 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 28.09 | 19.13 |
| Os09t0111100-01 | Rice | cytosol | 29.36 | 18.96 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 31.06 | 18.81 |
| GSMUA_AchrUn_... | Banana | cytosol | 25.11 | 18.61 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 28.09 | 18.23 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 31.49 | 18.18 |
| Solyc05g006050.2.1 | Tomato | nucleus | 25.96 | 18.1 |
| Solyc05g051410.2.1 | Tomato | nucleus | 26.38 | 18.02 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 31.06 | 17.94 |
| Zm00001d019696_P001 | Maize | cytosol | 28.94 | 17.57 |
| EER96424 | Sorghum | cytosol | 27.66 | 17.02 |
| Zm00001d005293_P001 | Maize | cytosol | 27.23 | 16.37 |
| Solyc07g054950.1.1 | Tomato | nucleus | 17.02 | 12.9 |
| Solyc03g006670.2.1 | Tomato | nucleus | 17.02 | 12.86 |
| Solyc02g079370.2.1 | Tomato | nucleus | 16.17 | 12.79 |
Protein Annotations
| EnsemblPlants:Solyc02g064860.1.1 | EnsemblPlantsGene:Solyc02g064860.1 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF242 | PFAM:PF00134 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | SEG:seg |
| SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI0002768A00 | UniProt:K4B6S1 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr2:-:35986734..35988447
Molecular Weight (calculated)
26083.2 Da
IEP (calculated)
4.563
GRAVY (calculated)
-0.103
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSHLQVQNI EPQNPILNFD ALLCKEDPLD EGDLGGGYHS DERNRNVKKI SPFLECDMFW EDGEVETLLS KEKLNLFDCT SLVSDGVLLG LRKKSLEWMV
101: TVIDHYGFNA LTAVLAVNYF DRFMSRVGFQ KGQPWMSQLV AVACLSIAAK VEEIQVPLLL GLQASIDECH DLILELMGTS GSKICQTNKR KCQSIPGTPD
201: GVIDAYFSCE SSNDSLVVAS SVSSLPEPQY KRSRT
101: TVIDHYGFNA LTAVLAVNYF DRFMSRVGFQ KGQPWMSQLV AVACLSIAAK VEEIQVPLLL GLQASIDECH DLILELMGTS GSKICQTNKR KCQSIPGTPD
201: GVIDAYFSCE SSNDSLVVAS SVSSLPEPQY KRSRT
001: MALEEEEESQ NAPFCVLDGL FCEEESEFHE QVDLCDESVE KFPFLNLGLS DHDMLWDDDE LSTLISKQEP CLYDEILDDE FLVLCREKAL DWIFKVKSHY
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R
Arabidopsis Description
CYCD3-3CYCD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VE15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.