Factsheet for Solyc03g120010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014299	Potato	cytosol	98.88	98.88
Bra030366.1-P	Field mustard	cytosol	74.72	80.61
CDY62165	Canola	cytosol	74.44	80.3
CDY61819	Canola	cytosol	74.16	80.0
Bra018983.1-P	Field mustard	cytosol	75.0	79.23
CDY62196	Canola	cytosol	75.0	79.23
CDX89958	Canola	cytosol	75.0	78.3
GSMUA_Achr6P00680_001	Banana	cytosol	76.12	78.1
CDY40132	Canola	cytosol	74.44	77.71
GSMUA_Achr2P17000_001	Banana	cytosol	74.16	77.19
AT3G15610.1	Thale cress	cytosol	73.6	76.83
AT1G52730.1	Thale cress	cytosol	73.31	76.09
KRH56652	Soybean	cytosol, endoplasmic reticulum, nucleus	74.44	75.28
KRH03754	Soybean	cytosol	74.16	75.0
Solyc06g052000.1.1	Tomato	cytosol	31.74	64.2
Solyc11g017070.1.1	Tomato	nucleus	23.6	25.77

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BMF0	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44239	PANTHER:PTHR44239:SF1	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:Solyc03g120010.2	EnsemblPlants:Solyc03g120010.2.1	UniParc:UPI00027669A2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

No Description!

Coordinates

chr3:-:68515926..68520746

Molecular Weight (calculated)

38594.1 Da

IEP (calculated)

5.527

GRAVY (calculated)

-0.340

Length

356 amino acids

Sequence
(BLAST)

001: MDKKKVVAPL VCHGHSRPVV DLSYSPITPD GFFLISASKD STPMLRNGET GDWIGTFEGH KGAVWSCCLD KHALRAASAS ADFSAKLWDA LTGDVLHSFD
101: HKHIVRACAF SEDTNLLLTG GFEKILRIFD LNRPDAPPRE IDSSPGSVRT VAWLHSDQTI LSSSGDAGGL RLWDVRTGKV VQILETKFPV TSAEVSQDGR
201: YITTADGSSV KFWDANHFGL VKSHELPCKV ESASLEPKFG NRFIAGGEDM WVHVFDFHTG EEIGCNKGHH GPVHCLRFSP GGESYASGSE DGTIRIWQLG
301: PLGQIEDNST ANGSTTANAN DGMGEVTQKI DELAVSETKK KEETQVDGVE QKVVDA

Best Arabidopsis Sequence Match ( AT3G15610.1 )
(BLAST)

001: MEKKKVATPL VCHGHSRPVV DLFYSPITPD GFFLISASKD SQPMLRNGET GDWIGTFEGH KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE
101: HKHIVRACAF SQDTKYLITG GFEKILRVFD LNRLDAPPTE IDKSPGSIRT LTWLHGDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG NKFVAGGEDM WVRLFDFHTG KEIGCNKGHH GPVHCVRFAP TGESYASGSE DGTIRIWQTG
301: PVNPEEISES KPKQSVDEVA RKIEGFHINK EGKTAEKPSD A

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9LW17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.