Factsheet for Bra018983.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62196	Canola	cytosol	100.0	100.0
CDX89958	Canola	cytosol	99.11	97.95
CDY40132	Canola	cytosol	98.22	97.07
Bra030366.1-P	Field mustard	cytosol	92.28	94.24
AT1G52730.1	Thale cress	cytosol	92.88	91.25
EES04724	Sorghum	cytosol	82.79	81.82
GSMUA_Achr6P00680_001	Banana	cytosol	82.79	80.4
Zm00001d046445_P002	Maize	cytosol, extracellular	81.01	80.29
EER90002	Sorghum	cytosol	80.71	80.0
GSMUA_Achr2P17000_001	Banana	cytosol	81.01	79.82
KRH56652	Soybean	cytosol, endoplasmic reticulum, nucleus	83.09	79.55
TraesCS5D01G201800.1	Wheat	cytosol	80.12	79.41
HORVU5Hr1G058430.1	Barley	cytosol	80.12	79.41
KRH03754	Soybean	cytosol	82.79	79.26
TraesCS5B01G194400.1	Wheat	cytosol, golgi	79.82	79.12
Os06t0598900-01	Rice	cytosol	80.12	78.95
TraesCS5A01G189200.2	Wheat	cytosol	80.12	78.03
TraesCS7A01G372500.2	Wheat	cytosol	78.93	77.78
HORVU7Hr1G084630.1	Barley	cytosol	78.93	77.78
Os02t0205400-01	Rice	cytosol	78.64	77.49
TraesCS7D01G350400.1	Wheat	cytosol	78.93	77.33
TraesCS7B01G254800.1	Wheat	cytosol	78.64	76.59
PGSC0003DMT400014299	Potato	cytosol	79.23	75.0
Solyc03g120010.2.1	Tomato	nucleus	79.23	75.0
Bra026760.1-P	Field mustard	cytosol	73.0	73.21
HORVU5Hr1G035620.1	Barley	cytosol	25.52	71.07
Zm00001d036905_P002	Maize	cytosol	79.82	70.6
HORVU7Hr1G085770.1	Barley	cytosol	23.44	64.75
HORVU1Hr1G058470.4	Barley	cytosol, nucleus, plastid	39.47	47.67
Bra025277.1-P	Field mustard	mitochondrion	23.74	23.26
Bra033012.1-P	Field mustard	cytosol	24.63	13.03

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra018983	EnsemblPlants:Bra018983.1	EnsemblPlants:Bra018983.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4DR40
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44239	PANTHER:PTHR44239:SF1
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000253E894	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

AT1G52730 (E=3e-188) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA06:-:895126..896660

Molecular Weight (calculated)

37155.6 Da

IEP (calculated)

6.392

GRAVY (calculated)

-0.426

Length

337 amino acids

Sequence
(BLAST)

001: MDKKKVAVPL VCHGHSRPVV DLFYSPITPD GFFLISASKD SHPMLRNGET ADWIGTFEGH KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE
101: HKHIVRACAF SEDTKRLLTG GFEKILRVFD LNRLDAPPTE VDKSPGSVRT LTWLHSDQTI LSSCADIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYEMPCNI ESASLEPKSG EKFVAGGEDM WVRVFDFFTG EEIGCNKGHH GPVHCVRFSP TGESYASGSE DGTIRIWQTT
301: PNQEENEKRV KHGVDEVAKK IEGFHINNKE AKTSEKP

Best Arabidopsis Sequence Match ( AT1G52730.1 )
(BLAST)

001: MEKKKVTIPQ VCHGHSRPVV DLFYSPITPD GFFLISASKD SHPMLRNGET GDWIGTFEGH KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE
101: HKHIVRACAF SEDTKSLLTG GFEKILRVFD MNRLDAPPTE VDKSPGSIRT LTWLHSDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG EKFVAGGEDM WVRVFDFYTG EEIGCNKGHH GPVHCVRFTP TGLSYASGSE DGTIRIWQTT
301: PANPEENETS SRRVKHSVDE VSKKIEGFHI NKEGKTAEKP SDT

Arabidopsis Description

AT1G52730 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.