Factsheet for Os02t0205400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04724	Sorghum	cytosol	84.5	84.75
Os06t0598900-01	Rice	cytosol	84.5	84.5
GSMUA_Achr2P17000_001	Banana	cytosol	81.87	81.87
GSMUA_Achr6P00680_001	Banana	cytosol	82.75	81.56
Bra030366.1-P	Field mustard	cytosol	77.78	80.61
CDY62165	Canola	cytosol	77.49	80.3
VIT_09s0002g05790.t01	Wine grape	cytosol	80.7	79.77
CDY61819	Canola	cytosol	76.61	79.39
VIT_11s0016g04710.t01	Wine grape	cytosol	80.7	79.31
KRH56652	Soybean	cytosol, endoplasmic reticulum, nucleus	81.58	79.26
KRH03754	Soybean	cytosol	80.99	78.69
CDY62196	Canola	cytosol	77.49	78.64
Bra018983.1-P	Field mustard	cytosol	77.49	78.64
CDY40132	Canola	cytosol	77.78	78.01
CDX89958	Canola	cytosol	77.19	77.42
AT3G15610.1	Thale cress	cytosol	77.19	77.42
AT1G52730.1	Thale cress	cytosol	76.9	76.68
AT1G15470.1	Thale cress	cytosol	73.39	75.38
CDY39650	Canola	cytosol	73.39	74.93
CDY55992	Canola	cytosol	72.81	74.11
CDX81717	Canola	cytosol	72.81	74.11
Bra026760.1-P	Field mustard	cytosol	72.51	73.81
PGSC0003DMT400014299	Potato	cytosol	76.02	73.03
Solyc06g052000.1.1	Tomato	cytosol	28.07	54.55
Os11t0606300-01	Rice	cytosol	5.26	26.47
Os08t0308100-01	Rice	nucleus	22.51	23.62
Os05t0256000-01	Rice	nucleus, plasma membrane	22.22	23.31

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:4328675	ProteinID:BAD16018.1	ProteinID:BAD38438.1	ProteinID:BAF08163.1
ProteinID:BAS77555.1	ProteinID:EEE56531.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os02g0205400	EnsemblPlants:Os02t0205400-01
PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44239
PANTHER:PTHR44239:SF1	UniProt:Q6Z6C8	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0000358C46	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015626912.1	:

Description

OsWD40-38WD40 repeat, region domain containing protein. (Os02t0205400-01)

Coordinates

chr2:+:5924727..5930096

Molecular Weight (calculated)

37203.5 Da

IEP (calculated)

5.888

GRAVY (calculated)

-0.364

Length

342 amino acids

Sequence
(BLAST)

001: MDRKKAGVPL VCHGHSRPVV DLFYSPVTPD GCFLISASKD SNPMIRNGDT GDWIGTFEGH KGAVWSCCLD TNALRAASGS ADFSAKVWDA LTGEELHSFE
101: HKHIVRACAF SEDTHLLLTG GLEKILRIYD MNRPDAAPRE IDKSPGSVRT VAWLHSDQSI LSCCTDMGGV RLWDVRSGKI AQTLETKATV TSAEVSQDGR
201: YIITADGSSV KFWDANYFGL VKSYNMPCNV ESASLEPKYG NKFIAGGEDM WVHVFDFFTG EEITCNKGHH GPVHCVRFAP GGESYASGSE DGTIRIWQLG
301: PATSDEQESP PNANGKLKVN TVSDAARKIE GFHLPKDGQT EG

Best Arabidopsis Sequence Match ( AT3G15610.1 )
(BLAST)

001: MEKKKVATPL VCHGHSRPVV DLFYSPITPD GFFLISASKD SQPMLRNGET GDWIGTFEGH KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE
101: HKHIVRACAF SQDTKYLITG GFEKILRVFD LNRLDAPPTE IDKSPGSIRT LTWLHGDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG NKFVAGGEDM WVRLFDFHTG KEIGCNKGHH GPVHCVRFAP TGESYASGSE DGTIRIWQTG
301: PVNPEEISES KPKQSVDEVA RKIEGFHINK EGKTAEKPSD A

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9LW17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.