Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030366.1-P | Field mustard | cytosol | 91.25 | 94.85 |
| CDY61819 | Canola | cytosol | 91.25 | 94.85 |
| CDY62165 | Canola | cytosol | 90.96 | 94.55 |
| CDY62196 | Canola | cytosol | 91.25 | 92.88 |
| Bra018983.1-P | Field mustard | cytosol | 91.25 | 92.88 |
| CDX89958 | Canola | cytosol | 91.55 | 92.08 |
| CDY40132 | Canola | cytosol | 91.25 | 91.79 |
| AT3G15610.1 | Thale cress | cytosol | 90.96 | 91.5 |
| Zm00001d046445_P002 | Maize | cytosol, extracellular | 80.76 | 81.47 |
| EER90002 | Sorghum | cytosol | 80.47 | 81.18 |
| EES04724 | Sorghum | cytosol | 79.88 | 80.35 |
| KRH56652 | Soybean | cytosol, endoplasmic reticulum, nucleus | 82.22 | 80.11 |
| KRH03754 | Soybean | cytosol | 81.92 | 79.83 |
| GSMUA_Achr6P00680_001 | Banana | cytosol | 80.76 | 79.83 |
| GSMUA_Achr2P17000_001 | Banana | cytosol | 79.01 | 79.24 |
| TraesCS5B01G194400.1 | Wheat | cytosol, golgi | 78.13 | 78.82 |
| HORVU5Hr1G058430.1 | Barley | cytosol | 78.13 | 78.82 |
| TraesCS7A01G372500.2 | Wheat | cytosol | 78.43 | 78.66 |
| Os06t0598900-01 | Rice | cytosol | 78.43 | 78.66 |
| TraesCS5D01G201800.1 | Wheat | cytosol | 77.84 | 78.53 |
| HORVU7Hr1G084630.1 | Barley | cytosol | 78.13 | 78.36 |
| TraesCS7D01G350400.1 | Wheat | cytosol | 78.43 | 78.2 |
| TraesCS7B01G254800.1 | Wheat | cytosol | 77.84 | 77.17 |
| TraesCS5A01G189200.2 | Wheat | cytosol | 77.84 | 77.17 |
| Os02t0205400-01 | Rice | cytosol | 76.68 | 76.9 |
| AT1G15470.1 | Thale cress | cytosol | 73.47 | 75.68 |
| PGSC0003DMT400014299 | Potato | cytosol | 76.68 | 73.88 |
| Solyc03g120010.2.1 | Tomato | nucleus | 76.09 | 73.31 |
| Zm00001d036905_P002 | Maize | cytosol | 79.01 | 71.13 |
| HORVU5Hr1G035620.1 | Barley | cytosol | 25.07 | 71.07 |
| HORVU7Hr1G085770.1 | Barley | cytosol | 23.03 | 64.75 |
| HORVU1Hr1G058470.4 | Barley | cytosol, nucleus, plastid | 39.07 | 48.03 |
| AT2G46280.2 | Thale cress | mitochondrion | 22.74 | 23.78 |
| AT2G46290.1 | Thale cress | cytosol | 21.87 | 21.13 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EntrezGene:841706 | UniProt:A0A178WLL7 | ProteinID:AAD55591.1 | ProteinID:AEE32845.1 |
| ProteinID:AEE32846.1 | EMBL:AK227970 | EMBL:AK317364 | ArrayExpress:AT1G52730 | EnsemblPlantsGene:AT1G52730 | RefSeq:AT1G52730 |
| TAIR:AT1G52730 | RefSeq:AT1G52730-TAIR-G | EnsemblPlants:AT1G52730.1 | TAIR:AT1G52730.1 | Unigene:At.28102 | EMBL:BT008315 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0008150 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| RefSeq:NP_175682.2 | RefSeq:NP_849800.1 | ProteinID:OAP18811.1 | PFAM:PF00400 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44239 | PANTHER:PTHR44239:SF1 | UniProt:Q9SSS7 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI00000A6762 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | : | : | : | : | : |
Description
AT1G52730 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSS7]
Coordinates
chr1:+:19642452..19645211
Molecular Weight (calculated)
37756.1 Da
IEP (calculated)
6.273
GRAVY (calculated)
-0.454
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKKVTIPQ VCHGHSRPVV DLFYSPITPD GFFLISASKD SHPMLRNGET GDWIGTFEGH KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE
101: HKHIVRACAF SEDTKSLLTG GFEKILRVFD MNRLDAPPTE VDKSPGSIRT LTWLHSDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG EKFVAGGEDM WVRVFDFYTG EEIGCNKGHH GPVHCVRFTP TGLSYASGSE DGTIRIWQTT
301: PANPEENETS SRRVKHSVDE VSKKIEGFHI NKEGKTAEKP SDT
101: HKHIVRACAF SEDTKSLLTG GFEKILRVFD MNRLDAPPTE VDKSPGSIRT LTWLHSDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG EKFVAGGEDM WVRVFDFYTG EEIGCNKGHH GPVHCVRFTP TGLSYASGSE DGTIRIWQTT
301: PANPEENETS SRRVKHSVDE VSKKIEGFHI NKEGKTAEKP SDT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.