CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89958	Canola	cytosol	99.12	99.12
Bra018983.1-P	Field mustard	cytosol	97.07	98.22
CDY62196	Canola	cytosol	97.07	98.22
CDY61819	Canola	cytosol	91.5	94.55
CDY62165	Canola	cytosol	91.2	94.24
AT1G52730.1	Thale cress	cytosol	91.79	91.25
EES04724	Sorghum	cytosol	80.65	80.65
GSMUA_Achr6P00680_001	Banana	cytosol	81.52	80.12
Zm00001d046445_P002	Maize	cytosol, extracellular	79.47	79.71
TraesCS5D01G201800.1	Wheat	cytosol	79.47	79.71
HORVU5Hr1G058430.1	Barley	cytosol	79.47	79.71
GSMUA_Achr2P17000_001	Banana	cytosol	79.77	79.53
EER90002	Sorghum	cytosol	79.18	79.41
TraesCS5B01G194400.1	Wheat	cytosol, golgi	79.18	79.41
KRH56652	Soybean	cytosol, endoplasmic reticulum, nucleus	81.82	79.26
KRH03754	Soybean	cytosol	81.52	78.98
TraesCS5A01G189200.2	Wheat	cytosol	79.47	78.32
Os06t0598900-01	Rice	cytosol	78.3	78.07
Os02t0205400-01	Rice	cytosol	78.01	77.78
TraesCS7A01G372500.2	Wheat	cytosol	77.13	76.9
HORVU7Hr1G084630.1	Barley	cytosol	77.13	76.9
TraesCS7D01G350400.1	Wheat	cytosol	77.13	76.45
TraesCS7B01G254800.1	Wheat	cytosol	76.83	75.72
CDY39650	Canola	cytosol	73.31	74.63
Solyc03g120010.2.1	Tomato	nucleus	77.71	74.44
PGSC0003DMT400014299	Potato	cytosol	77.71	74.44
CDY55992	Canola	cytosol	72.73	73.81
CDX81717	Canola	cytosol	72.73	73.81
Zm00001d036905_P002	Maize	cytosol	78.3	70.08
HORVU5Hr1G035620.1	Barley	cytosol	24.63	69.42
HORVU7Hr1G085770.1	Barley	cytosol	22.58	63.11
HORVU1Hr1G058470.4	Barley	cytosol, nucleus, plastid	38.71	47.31
CDY34145	Canola	cytosol, mitochondrion	24.05	24.85
CDY13713	Canola	mitochondrion	23.75	23.55
CDY71621	Canola	mitochondrion	23.46	23.26
CDY03970	Canola	cytosol	24.34	12.21

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078HQN0	EnsemblPlants:CDY40132	ProteinID:CDY40132	ProteinID:CDY40132.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00069058001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44239
PANTHER:PTHR44239:SF1	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EDEF37	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

BnaC06g05570DBnaC06g05570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQN0]

Coordinates

chrLK032464:-:17438..19514

Molecular Weight (calculated)

37548.9 Da

IEP (calculated)

6.274

GRAVY (calculated)

-0.465

Length

341 amino acids

Sequence
(BLAST)

001: MDKKKAAVPL VCHGHSRPVV DLFYSPITPD GFFLISASKD SHPMLRNGET ADWIGTFEGH KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE
101: HKHIVRACAF SEDTKRLLTG GFEKILRVFD LNRLDAPPTE VDKSPGSVRT LTWLHSDQTI LSSCTDIGGV RLWDVRSGKI MQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYEMPCNI ESASLEPKSG EKFVAGGEDM WVRVFDFYTG EEIGCNKGHH GPVHCVRFSP TGESYASGSE DGTIRIWQTA
301: PNQEENEKRV KHGVDEVAKK IEGFHINNKE AKNSEKPSSD A

Best Arabidopsis Sequence Match ( AT1G52730.1 )
(BLAST)

001: MEKKKVTIPQ VCHGHSRPVV DLFYSPITPD GFFLISASKD SHPMLRNGET GDWIGTFEGH KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE
101: HKHIVRACAF SEDTKSLLTG GFEKILRVFD MNRLDAPPTE VDKSPGSIRT LTWLHSDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG EKFVAGGEDM WVRVFDFYTG EEIGCNKGHH GPVHCVRFTP TGLSYASGSE DGTIRIWQTT
301: PANPEENETS SRRVKHSVDE VSKKIEGFHI NKEGKTAEKP SDT

Arabidopsis Description

AT1G52730 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.