Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER90002 | Sorghum | cytosol | 86.35 | 96.76 |
| Zm00001d046445_P002 | Maize | cytosol, extracellular | 85.83 | 96.18 |
| Os06t0598900-01 | Rice | cytosol | 80.58 | 89.77 |
| TraesCS5B01G194400.1 | Wheat | cytosol, golgi | 76.64 | 85.88 |
| TraesCS5D01G201800.1 | Wheat | cytosol | 76.38 | 85.59 |
| TraesCS7A01G372500.2 | Wheat | cytosol | 76.64 | 85.38 |
| HORVU7Hr1G084630.1 | Barley | cytosol | 76.64 | 85.38 |
| HORVU5Hr1G058430.1 | Barley | cytosol | 76.12 | 85.29 |
| TraesCS7D01G350400.1 | Wheat | cytosol | 76.9 | 85.17 |
| TraesCS7B01G254800.1 | Wheat | cytosol | 77.17 | 84.97 |
| TraesCS5A01G189200.2 | Wheat | cytosol | 76.64 | 84.39 |
| Bra030366.1-P | Field mustard | cytosol | 71.92 | 83.03 |
| CDY62165 | Canola | cytosol | 71.65 | 82.73 |
| CDY61819 | Canola | cytosol | 70.87 | 81.82 |
| GSMUA_Achr6P00680_001 | Banana | cytosol | 73.49 | 80.69 |
| GSMUA_Achr2P17000_001 | Banana | cytosol | 71.65 | 79.82 |
| CDY62196 | Canola | cytosol | 70.6 | 79.82 |
| Bra018983.1-P | Field mustard | cytosol | 70.6 | 79.82 |
| AT3G15610.1 | Thale cress | cytosol | 71.13 | 79.47 |
| AT1G52730.1 | Thale cress | cytosol | 71.13 | 79.01 |
| KRH56652 | Soybean | cytosol, endoplasmic reticulum, nucleus | 72.97 | 78.98 |
| VIT_11s0016g04710.t01 | Wine grape | cytosol | 71.92 | 78.74 |
| CDX89958 | Canola | cytosol | 70.34 | 78.59 |
| KRH03754 | Soybean | cytosol | 72.44 | 78.41 |
| CDY40132 | Canola | cytosol | 70.08 | 78.3 |
| VIT_09s0002g05790.t01 | Wine grape | cytosol | 70.6 | 77.75 |
| HORVU5Hr1G035620.1 | Barley | cytosol | 23.88 | 75.21 |
| AT1G15470.1 | Thale cress | cytosol | 65.09 | 74.47 |
| CDY39650 | Canola | cytosol | 64.3 | 73.13 |
| PGSC0003DMT400014299 | Potato | cytosol | 67.72 | 72.47 |
| CDY55992 | Canola | cytosol | 63.52 | 72.02 |
| Bra026760.1-P | Field mustard | cytosol | 63.25 | 71.73 |
| CDX81717 | Canola | cytosol | 63.25 | 71.73 |
| HORVU7Hr1G085770.1 | Barley | cytosol | 21.26 | 66.39 |
| Solyc06g052000.1.1 | Tomato | cytosol | 25.2 | 54.55 |
| HORVU1Hr1G058470.4 | Barley | cytosol, nucleus, plastid | 37.27 | 50.9 |
| Zm00001d018873_P001 | Maize | plasma membrane | 20.47 | 23.93 |
| Zm00001d007900_P003 | Maize | mitochondrion | 20.21 | 23.62 |
Protein Annotations
| EntrezGene:103629787 | Gene3D:2.130.10.10 | MapMan:35.1 | UniProt:A0A1D6LSD9 | ProteinID:AQK82364.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44239 | PANTHER:PTHR44239:SF1 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI0008450304 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | EnsemblPlantsGene:Zm00001d036905 |
| EnsemblPlants:Zm00001d036905_P002 | EnsemblPlants:Zm00001d036905_T002 | SEG:seg | : | : | : |
Description
Transducin/WD40 repeat-like superfamily protein
Coordinates
chr6:+:106070143..106077250
Molecular Weight (calculated)
41395.9 Da
IEP (calculated)
6.270
GRAVY (calculated)
-0.186
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKKVAIPL VCHGHSRPVV DLFYSPVTPD GYFLISASKD TNPMLRNGET GDWIGTFQGH KGAVWSCCLD RNALRAASAS ADFSACLLLA GPIFYLLVLL
101: DKWVLRWSLR RLAGDSPRCS IVITIKVWDA LTGDELHSFE HKHIVRACAF SEDTHLLLTG GMEKTLRVYD INRPDAAPRE LDKSPGSVRT AAWLHSDQTI
201: LSSCTDMGGV RLWDVRTGKI VQTLETKASI TSAEVSQDGR FITTADGSSV KFWDANHFGL VKSYDMPCNV ESASLEPKSG SKFVAGGEDL WVHVFDFFTG
301: EEIACNKGHH GPVHCVRFAP GGESYASGSE DGTIRIWQLS PVNADDDEAA NANGKANAAV NEVTTKLEGG FHIPKEGQAG G
101: DKWVLRWSLR RLAGDSPRCS IVITIKVWDA LTGDELHSFE HKHIVRACAF SEDTHLLLTG GMEKTLRVYD INRPDAAPRE LDKSPGSVRT AAWLHSDQTI
201: LSSCTDMGGV RLWDVRTGKI VQTLETKASI TSAEVSQDGR FITTADGSSV KFWDANHFGL VKSYDMPCNV ESASLEPKSG SKFVAGGEDL WVHVFDFFTG
301: EEIACNKGHH GPVHCVRFAP GGESYASGSE DGTIRIWQLS PVNADDDEAA NANGKANAAV NEVTTKLEGG FHIPKEGQAG G
001: MGAPLVCHGH SRPVVDVAYS PVTPDGFFLI SASKDSNPML RNGETGDWIG TFEGHKGAVW SCSLDKNAIR AASASADFTA KIWNALTGDE LHSFEHKHIV
101: RACAFSEDTH RLLTGGMEKI LRIFDLNRPD APPKEVGNSP GSIRTVEWLH SDNTILSSCT DTGDIRLWDI RSDKIVHTLE TKSPVTSAEV SQDGRYITTA
201: DGSSVKFWDA KNFGLLKSYD MPCNVESASL EPKHGNTFIA GGEDMWVHRF DFQTGEEIGC NKGHHGPVHC VRYAPGGESY TSGSEDGTVR IWVVGSVNHP
301: EESNLSGHVK LVAEEVVRKA ESLRISEKAA EAK
101: RACAFSEDTH RLLTGGMEKI LRIFDLNRPD APPKEVGNSP GSIRTVEWLH SDNTILSSCT DTGDIRLWDI RSDKIVHTLE TKSPVTSAEV SQDGRYITTA
201: DGSSVKFWDA KNFGLLKSYD MPCNVESASL EPKHGNTFIA GGEDMWVHRF DFQTGEEIGC NKGHHGPVHC VRYAPGGESY TSGSEDGTVR IWVVGSVNHP
301: EESNLSGHVK LVAEEVVRKA ESLRISEKAA EAK
Arabidopsis Description
F9L1.42 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI22]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.