Factsheet for Zm00001d018873_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007900_P003	Maize	mitochondrion	99.39	99.39
EER98031	Sorghum	mitochondrion	97.55	97.55
Os08t0308100-01	Rice	nucleus	91.1	91.1
Os05t0256000-01	Rice	nucleus, plasma membrane	89.57	89.57
TraesCS4D01G149800.1	Wheat	plastid	88.96	88.96
TraesCS2B01G539500.1	Wheat	cytosol, mitochondrion	88.34	87.8
TraesCS4A01G166500.1	Wheat	nucleus	89.57	86.14
HORVU4Hr1G040280.4	Barley	cytosol, mitochondrion	89.26	85.84
TraesCS2A01G511400.1	Wheat	cytosol, mitochondrion	84.66	84.92
TraesCS4B01G164300.1	Wheat	golgi	84.66	83.64
KRH74580	Soybean	endoplasmic reticulum	80.37	80.37
VIT_01s0011g06630.t01	Wine grape	cytosol	80.37	80.37
GSMUA_Achr2P07570_001	Banana	cytosol	77.91	79.13
KRH23773	Soybean	endoplasmic reticulum	78.53	78.53
KRH40031	Soybean	endoplasmic reticulum	78.53	78.53
PGSC0003DMT400023872	Potato	cytosol, mitochondrion	77.91	77.91
CDY34145	Canola	cytosol, mitochondrion	77.3	76.36
Solyc11g017070.1.1	Tomato	nucleus	76.07	76.07
AT2G46280.2	Thale cress	mitochondrion	76.38	75.91
CDY13713	Canola	mitochondrion	76.99	72.97
Bra025277.1-P	Field mustard	mitochondrion	76.99	72.97
CDY71621	Canola	mitochondrion	76.38	72.38
AT2G46290.1	Thale cress	cytosol	74.54	68.45
GSMUA_Achr11P...	Banana	cytosol	51.53	56.76
Bra033012.1-P	Field mustard	cytosol	77.3	39.56
CDY03970	Canola	cytosol	77.3	37.06
Zm00001d046445_P002	Maize	cytosol, extracellular	23.62	22.65
Zm00001d036905_P002	Maize	cytosol	23.93	20.47

Protein Annotations

EntrezGene:100281110	MapMan:17.4.1.3.9	Gene3D:2.130.10.10	UniProt:B6SSB6	EMBL:EU955631	InterPro:G-protein_beta_WD-40_rep
GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282
GO:GO:0019538	GO:GO:0033290	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	HAMAP:MF_03008
ProteinID:ONM51523.1	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19877	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000182AFC9	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d018873	EnsemblPlants:Zm00001d018873_P001	EnsemblPlants:Zm00001d018873_T001
InterPro:eIF3i	:	:	:	:	:

Description

Eukaryotic translation initiation factor 3 subunit 2

Coordinates

chr7:-:7917158..7920961

Molecular Weight (calculated)

36261.6 Da

IEP (calculated)

6.441

GRAVY (calculated)

-0.410

Length

326 amino acids

Sequence
(BLAST)

001: MRPILMKGHE RPLTFLRYNR DGDLLFSCAK DHTPTVWYAD NGDRLGTYRG HNGAVWTCDV SRDSARLITG SADQTAKLWD VSTGKELFSF RFDAPARSVE
101: FAIGDALAVV TTDNFMDHVP TVQVKRIAED IDDQTEESAL VITGIKGRIN RAVWGPLNRT IITAGEDATV RIWDSETGQL LKESDKESGH QKTISSLSKS
201: LDWSHFITGS LDKSAKLWDT RTLTLIKTYV TERPVNAVDI SPTHDTVVLG GGQDAMNVTM TDRRAGKFEA KFYHKILQEE IGGVKGHFGP INALAFNPDG
301: RSFSSGGEDG YVRLHHFDSD YFSIKM

Best Arabidopsis Sequence Match ( AT2G46280.1 )
(BLAST)

001: MRPILMKGHE RPLTFLRYNR EGDLLFSCAK DHTPTLWFAD NGERLGTYRG HNGAVWCCDV SRDSSRLITG SADQTAKLWD VKSGKELFTF KFNAPTRSVD
101: FAVGDRLAVI TTDHFVDRTA AIHVKRIAED PEEQDAESVL VLHCPDGKKR INRAVWGPLN QTIVSGGEDK VIRIWDAETG KLLKQSDEEV GHKKDITSLC
201: KAADDSHFLT GSLDKTAKLW DMRTLTLLKT YTTVVPVNAV SLSPLLNHVV LGGGQDASAV TTTDHRAGKF EAKFYDKILQ EEIGGVKGHF GPINALAFNP
301: DGKSFSSGGE DGYVRLHHFD SDYFNIKI

Arabidopsis Description

TIF3I1Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/Swiss-Prot;Acc:Q38884]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.