CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23773	Soybean	endoplasmic reticulum	96.32	96.32
KRH74580	Soybean	endoplasmic reticulum	94.17	94.17
VIT_01s0011g06630.t01	Wine grape	cytosol	89.57	89.57
PGSC0003DMT400023872	Potato	cytosol, mitochondrion	87.42	87.42
GSMUA_Achr2P07570_001	Banana	cytosol	85.58	86.92
Solyc11g017070.1.1	Tomato	nucleus	86.5	86.5
Os08t0308100-01	Rice	nucleus	82.82	82.82
Os05t0256000-01	Rice	nucleus, plasma membrane	82.21	82.21
AT2G46280.2	Thale cress	mitochondrion	81.6	81.1
CDY34145	Canola	cytosol, mitochondrion	81.6	80.61
TraesCS4D01G149800.1	Wheat	plastid	80.37	80.37
TraesCS2B01G539500.1	Wheat	cytosol, mitochondrion	80.06	79.57
CDY13713	Canola	mitochondrion	83.74	79.36
Bra025277.1-P	Field mustard	mitochondrion	83.44	79.07
Zm00001d007900_P003	Maize	mitochondrion	78.53	78.53
Zm00001d018873_P001	Maize	plasma membrane	78.53	78.53
CDY71621	Canola	mitochondrion	82.82	78.49
EER98031	Sorghum	mitochondrion	78.22	78.22
TraesCS2A01G511400.1	Wheat	cytosol, mitochondrion	77.91	78.15
Os11t0606300-01	Rice	cytosol	16.26	77.94
HORVU4Hr1G040280.4	Barley	cytosol, mitochondrion	80.06	76.99
TraesCS4A01G166500.1	Wheat	nucleus	80.06	76.99
AT2G46290.1	Thale cress	cytosol	80.67	74.08
TraesCS4B01G164300.1	Wheat	golgi	74.23	73.33
GSMUA_Achr11P...	Banana	cytosol	54.91	60.47
Bra033012.1-P	Field mustard	cytosol	81.6	41.76
CDY03970	Canola	cytosol	81.6	39.12
KRH56652	Soybean	cytosol, endoplasmic reticulum, nucleus	24.85	23.01
KRH03754	Soybean	cytosol	24.85	23.01

Protein Annotations

EntrezGene:100781100	MapMan:17.4.1.3.9	Gene3D:2.130.10.10	EMBL:ACUP02006014	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_09G234100
GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282
GO:GO:0019538	GO:GO:0033290	UniProt:I1L5T1	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlants:KRH40031	ProteinID:KRH40031	ProteinID:KRH40031.1	HAMAP:MF_03008	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19877	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0002338324	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
InterPro:eIF3i	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:45648833..45651130

Molecular Weight (calculated)

35869.3 Da

IEP (calculated)

6.746

GRAVY (calculated)

-0.334

Length

326 amino acids

Sequence
(BLAST)

001: MRPILMKGHE RPLTFLKYNR DGDLLFSCAK DHNPTVWFAD NGERLGTYRG HNGAVWTCDV SRDSVRLITG SADQTAKLWD VQSGLQLYTF NFDSPARSVD
101: FSVGDRLAVI TTDPFMELSS AIHVKRIADD PTEQSGESLL LIKGPLGRIN RAIWGPLNST IISAGEDAVI RIWDSETGKL LKESDKESGH KKTVTSLAKS
201: ADGSHFLTGS LDKSARLWDT RSLTLIKTYV TERPVNAVTM SPLLDHVVIG GGQDASAVTT TDHRAGKFEA KFFDKILQEE IGGVKGHFGP INALAFNPDG
301: KSFSSGGEDG YVRLHHFDPD YFNIKI

Best Arabidopsis Sequence Match ( AT2G46290.1 )
(BLAST)

001: MTIECVNPEG LRFNQMKSSS HQTLETRMRP ILMKGHERPL TFLRYNRNGD LLFSCAKDHT PTVWFADNGE RLGTYRGHSG AVWCCDISRD SSRLITGSAD
101: QTAKLWDVKS GKELFTFKFG APARSVDFSV GDHLAVITTD HFVGTSSAIH VKRIAEDPED QVGDSVLVLQ SPDGKKKINR AVWGPLNQTI VSGGEDAAIR
201: IWDAETGKLL KQSDEEVGHK EAITSLCKAA DDSHFLTGSH DKTAKLWDMR TLTLIKTYTT VVPVNAVAMS PLLNHVVLGG GQDASAVTTT DHRAGKFEAK
301: FYDTILQEEI GGVKGHFGPI NALAFSPDGK SFSSGGEDGY VRLHHFDSNY FNIKI

Arabidopsis Description

Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/TrEMBL;Acc:A0A178VR74]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.