CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23773	Soybean	endoplasmic reticulum	94.79	94.79
KRH40031	Soybean	endoplasmic reticulum	94.17	94.17
VIT_01s0011g06630.t01	Wine grape	cytosol	91.72	91.72
PGSC0003DMT400023872	Potato	cytosol, mitochondrion	88.96	88.96
GSMUA_Achr2P07570_001	Banana	cytosol	86.81	88.16
Solyc11g017070.1.1	Tomato	nucleus	87.42	87.42
CDY34145	Canola	cytosol, mitochondrion	84.36	83.33
Os08t0308100-01	Rice	nucleus	82.82	82.82
AT2G46280.2	Thale cress	mitochondrion	82.82	82.32
Os05t0256000-01	Rice	nucleus, plasma membrane	81.9	81.9
TraesCS4D01G149800.1	Wheat	plastid	81.29	81.29
Zm00001d007900_P003	Maize	mitochondrion	80.67	80.67
TraesCS2B01G539500.1	Wheat	cytosol, mitochondrion	80.98	80.49
Zm00001d018873_P001	Maize	plasma membrane	80.37	80.37
EER98031	Sorghum	mitochondrion	80.37	80.37
CDY13713	Canola	mitochondrion	84.66	80.23
Bra025277.1-P	Field mustard	mitochondrion	84.36	79.94
CDY71621	Canola	mitochondrion	84.05	79.65
TraesCS2A01G511400.1	Wheat	cytosol, mitochondrion	78.83	79.08
HORVU4Hr1G040280.4	Barley	cytosol, mitochondrion	80.98	77.88
TraesCS4A01G166500.1	Wheat	nucleus	80.98	77.88
Os11t0606300-01	Rice	cytosol	15.64	75.0
AT2G46290.1	Thale cress	cytosol	81.6	74.93
TraesCS4B01G164300.1	Wheat	golgi	75.15	74.24
GSMUA_Achr11P...	Banana	cytosol	56.44	62.16
Bra033012.1-P	Field mustard	cytosol	84.36	43.17
CDY03970	Canola	cytosol	84.36	40.44
KRH03754	Soybean	cytosol	24.23	22.44
KRH56652	Soybean	cytosol, endoplasmic reticulum, nucleus	24.23	22.44

Protein Annotations

EntrezGene:100793485	MapMan:17.4.1.3.9	Gene3D:2.130.10.10	EMBL:ACUP02000049	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_01G029600
GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282
GO:GO:0019538	GO:GO:0033290	UniProt:I1J582	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlants:KRH74580	ProteinID:KRH74580	ProteinID:KRH74580.1	HAMAP:MF_03008	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19877	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0002336FDD	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
InterPro:eIF3i	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:3137027..3140461

Molecular Weight (calculated)

35860.4 Da

IEP (calculated)

7.383

GRAVY (calculated)

-0.372

Length

326 amino acids

Sequence
(BLAST)

001: MRPILMKGHE RPLTFLKYNR DGDLLFSCAK DHNPTVWFAD NGERLGTYRG HNGAVWCCDV SRDSGRLITG SADQTAKLWN VQTGQQLFTF NFDSPARSVD
101: FAVGDKLAVI TTDPFMELPS AIHVKRIAND PAEQTGESVL LIKGPQGRIN RAIWGPLNRT IISAGEDAVI RIWDSETGKL LKESDKESGH KKTVTSLAKS
201: ADGSHFLTGS LDKSARLWDT RTLTLIKTYV TERPVNAVAM SPLLDHVVLG GGQDASAVTT TDHRAGKFEA KFYDKILQEE IGGVKGHFGP INALAFNPDG
301: KSFSSGGEDG YVRLHHFDPD YFNIKI

Best Arabidopsis Sequence Match ( AT2G46290.1 )
(BLAST)

001: MTIECVNPEG LRFNQMKSSS HQTLETRMRP ILMKGHERPL TFLRYNRNGD LLFSCAKDHT PTVWFADNGE RLGTYRGHSG AVWCCDISRD SSRLITGSAD
101: QTAKLWDVKS GKELFTFKFG APARSVDFSV GDHLAVITTD HFVGTSSAIH VKRIAEDPED QVGDSVLVLQ SPDGKKKINR AVWGPLNQTI VSGGEDAAIR
201: IWDAETGKLL KQSDEEVGHK EAITSLCKAA DDSHFLTGSH DKTAKLWDMR TLTLIKTYTT VVPVNAVAMS PLLNHVVLGG GQDASAVTTT DHRAGKFEAK
301: FYDTILQEEI GGVKGHFGPI NALAFSPDGK SFSSGGEDGY VRLHHFDSNY FNIKI

Arabidopsis Description

Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/TrEMBL;Acc:A0A178VR74]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.