Factsheet for PGSC0003DMT400023872

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g017070.1.1	Tomato	nucleus	97.24	97.24
KRH74580	Soybean	endoplasmic reticulum	88.96	88.96
VIT_01s0011g06630.t01	Wine grape	cytosol	88.34	88.34
KRH23773	Soybean	endoplasmic reticulum	88.04	88.04
KRH40031	Soybean	endoplasmic reticulum	87.42	87.42
AT2G46280.2	Thale cress	mitochondrion	84.36	83.84
GSMUA_Achr2P07570_001	Banana	cytosol	82.52	83.8
CDY34145	Canola	cytosol, mitochondrion	84.36	83.33
Bra025277.1-P	Field mustard	mitochondrion	85.28	80.81
CDY13713	Canola	mitochondrion	85.28	80.81
CDY71621	Canola	mitochondrion	84.66	80.23
Os08t0308100-01	Rice	nucleus	80.06	80.06
TraesCS4D01G149800.1	Wheat	plastid	79.45	79.45
Os05t0256000-01	Rice	nucleus, plasma membrane	79.45	79.45
TraesCS2B01G539500.1	Wheat	cytosol, mitochondrion	79.14	78.66
Zm00001d007900_P003	Maize	mitochondrion	77.91	77.91
Zm00001d018873_P001	Maize	plasma membrane	77.91	77.91
EER98031	Sorghum	mitochondrion	77.3	77.3
TraesCS2A01G511400.1	Wheat	cytosol, mitochondrion	76.99	77.23
AT2G46290.1	Thale cress	cytosol	83.13	76.34
HORVU4Hr1G040280.4	Barley	cytosol, mitochondrion	79.14	76.11
TraesCS4A01G166500.1	Wheat	nucleus	79.14	76.11
Os11t0606300-01	Rice	cytosol	15.64	75.0
TraesCS4B01G164300.1	Wheat	golgi	73.62	72.73
GSMUA_Achr11P...	Banana	cytosol	55.52	61.15
Bra033012.1-P	Field mustard	cytosol	84.36	43.17
CDY03970	Canola	cytosol	84.36	40.44
PGSC0003DMT400014299	Potato	cytosol	25.15	23.03

Protein Annotations

EntrezGene:102592807	MapMan:17.4.1.3.9	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0001731	GO:GO:0001732
GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852
GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0033290
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1AJ32	HAMAP:MF_03008	PFAM:PF00400
EnsemblPlantsGene:PGSC0003DMG400009231	PGSC:PGSC0003DMG400009231	EnsemblPlants:PGSC0003DMT400023872	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19877	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000296A7B2	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006351166.1	InterPro:eIF3i

Description

Eukaryotic translation initiation factor 3 subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400009231]

Coordinates

chr11:+:9004475..9012212

Molecular Weight (calculated)

35909.6 Da

IEP (calculated)

7.161

GRAVY (calculated)

-0.334

Length

326 amino acids

Sequence
(BLAST)

001: MRPILMKGHE RPLTFLKYNR DGDLLFSCAK DHTPTVWFAD NGERLGTYRG HNGAVWCCDV SRDSSRLITG SADQTAMLWD VQTGTQLHTF TFDSPARSVD
101: FSVGDKLAVI TTDPFMGLTS AIHVKRISED PSEQISESVL VLKGPQGRIN RAVWGPLNKT IISAGEDAVI RIWDAETGKI LKESDKEIGH KKGITSLQKS
201: VDGSHFITGS LDKSAKLWDI RTLTLIKNYT TERPVNAVTM SPLLNHVVLG GGQDASAVTT TDHRAGKFEA KFYDKILTEE IGGVKGHFGP INALAFNPDG
301: KSFSSGGEDG YVRLHHFDQD YFNIKI

Best Arabidopsis Sequence Match ( AT2G46290.1 )
(BLAST)

001: MTIECVNPEG LRFNQMKSSS HQTLETRMRP ILMKGHERPL TFLRYNRNGD LLFSCAKDHT PTVWFADNGE RLGTYRGHSG AVWCCDISRD SSRLITGSAD
101: QTAKLWDVKS GKELFTFKFG APARSVDFSV GDHLAVITTD HFVGTSSAIH VKRIAEDPED QVGDSVLVLQ SPDGKKKINR AVWGPLNQTI VSGGEDAAIR
201: IWDAETGKLL KQSDEEVGHK EAITSLCKAA DDSHFLTGSH DKTAKLWDMR TLTLIKTYTT VVPVNAVAMS PLLNHVVLGG GQDASAVTTT DHRAGKFEAK
301: FYDTILQEEI GGVKGHFGPI NALAFSPDGK SFSSGGEDGY VRLHHFDSNY FNIKI

Arabidopsis Description

Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/TrEMBL;Acc:A0A178VR74]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.