CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34145	Canola	cytosol, mitochondrion	48.38	99.7
CDY13713	Canola	mitochondrion	45.0	88.95
CDY71621	Canola	mitochondrion	44.71	88.37
AT2G46280.2	Thale cress	mitochondrion	42.06	87.2
PGSC0003DMT400023872	Potato	cytosol, mitochondrion	40.44	84.36
KRH74580	Soybean	endoplasmic reticulum	40.44	84.36
Solyc11g017070.1.1	Tomato	nucleus	39.85	83.13
VIT_01s0011g06630.t01	Wine grape	cytosol	39.41	82.21
KRH23773	Soybean	endoplasmic reticulum	39.41	82.21
KRH40031	Soybean	endoplasmic reticulum	39.12	81.6
AT2G46290.1	Thale cress	cytosol	41.03	78.59
GSMUA_Achr2P07570_001	Banana	cytosol	37.06	78.5
Os08t0308100-01	Rice	nucleus	37.35	77.91
Zm00001d018873_P001	Maize	plasma membrane	37.06	77.3
Zm00001d007900_P003	Maize	mitochondrion	36.91	76.99
Os05t0256000-01	Rice	nucleus, plasma membrane	36.76	76.69
EER98031	Sorghum	mitochondrion	36.62	76.38
TraesCS4D01G149800.1	Wheat	plastid	36.47	76.07
TraesCS2B01G539500.1	Wheat	cytosol, mitochondrion	36.32	75.3
Os11t0606300-01	Rice	cytosol	7.5	75.0
HORVU4Hr1G040280.4	Barley	cytosol, mitochondrion	36.62	73.45
TraesCS4A01G166500.1	Wheat	nucleus	36.62	73.45
TraesCS2A01G511400.1	Wheat	cytosol, mitochondrion	35.0	73.23
TraesCS4B01G164300.1	Wheat	golgi	34.26	70.61
Bra033012.1-P	Field mustard	cytosol	53.68	57.3
GSMUA_Achr11P...	Banana	cytosol	24.56	56.42
CDY62165	Canola	cytosol	12.35	25.45
CDY61819	Canola	cytosol	12.21	25.15
CDY62196	Canola	cytosol	12.21	24.63
CDX89958	Canola	cytosol	12.21	24.34
CDY40132	Canola	cytosol	12.21	24.34
CDY39650	Canola	cytosol	11.91	24.18
CDY55992	Canola	cytosol	11.76	23.81
CDX81717	Canola	cytosol	11.62	23.51

Protein Annotations

MapMan:15.3.4.1.4	MapMan:17.4.1.3.9	Gene3D:2.130.10.10	Gene3D:2.30.30.140	GO:A0A078EPR7	EnsemblPlants:CDY03970
ProteinID:CDY03970	ProteinID:CDY03970.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412
GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0033290	EnsemblPlantsGene:GSBRNA2T00117491001
InterPro:IPR001680	InterPro:IPR010750	InterPro:IPR015943	InterPro:IPR017986	HAMAP:MF_03008	PFAM:PF00400
PFAM:PF07039	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS51518
PANTHER:PTHR19877	InterPro:SGF29_tudor-like_dom	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE8C95	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:eIF3i	SEG:seg

Description

BnaC02g36850D

Coordinates

chrLK031948:-:22943..33461

Molecular Weight (calculated)

76084.4 Da

IEP (calculated)

6.949

GRAVY (calculated)

-0.511

Length

680 amino acids

Sequence
(BLAST)

001: MSSTPAVAGI LENTKELDRL RKKQEDVLVE INKIHKKLQS LNVTLLRLCC NTAPEVVEKP GDTSLPRLKN LYIQAKELSE SEVTVSNIRL AQLDSLLPSG
101: QQRGKLDGLR FYDACNDITE VAEGNGLKRK RMKAESDVTR VPPSTRNQIE AYASLKGEQV AARITADDAE QDEWLVVKVI HFDRETKEVE VLDEESGDDE
201: EGGGQRTYKL PMPCILPFPK RNDPSTTQEF LPGKHVLAVY PGTTALYKAT VVSTPRKRKS DEYLLEFDDD EEDGALPQRT VPFHKVAKAR VKGFDVIAFF
301: VIKDEINLKD EKWKRTGLAW SRLEVVKRRR KVDDEKGLRC CDKERAFKEK MRPILMKGHE RPLTFLRYNR DGDMLFSCAK DHTPTLWYAD NGERHGTFRG
401: HNGAVWCCDV SRDSLRLITG SADQSAKLWD VKTGQQLFSF KFGSPARSVD FALGDKLAVI TTDPFMERTS AIHVKRIAED PEDQVSESVL VLESPNGRKR
501: INRAVWGPLN QTIVSGGEDA VLRIWDAETG KLLKESDAEV GHKNTITSLT KSADDSHFIT GSLDKTAKAC LWDMRTLTLL KTYVSGVPVN AVSMSPLLDH
601: VVLGGGQDAS AVTTTDHRAG KFEAKFYDKI LQEEIGGVKG HFGPINALAF NPDGKSFSSG GEDGYVRLHH FDSDYFNIRI

Best Arabidopsis Sequence Match ( AT2G46290.1 )
(BLAST)

001: MTIECVNPEG LRFNQMKSSS HQTLETRMRP ILMKGHERPL TFLRYNRNGD LLFSCAKDHT PTVWFADNGE RLGTYRGHSG AVWCCDISRD SSRLITGSAD
101: QTAKLWDVKS GKELFTFKFG APARSVDFSV GDHLAVITTD HFVGTSSAIH VKRIAEDPED QVGDSVLVLQ SPDGKKKINR AVWGPLNQTI VSGGEDAAIR
201: IWDAETGKLL KQSDEEVGHK EAITSLCKAA DDSHFLTGSH DKTAKLWDMR TLTLIKTYTT VVPVNAVAMS PLLNHVVLGG GQDASAVTTT DHRAGKFEAK
301: FYDTILQEEI GGVKGHFGPI NALAFSPDGK SFSSGGEDGY VRLHHFDSNY FNIKI

Arabidopsis Description

Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/TrEMBL;Acc:A0A178VR74]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.