CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030366.1-P	Field mustard	cytosol	99.7	99.7
CDY61819	Canola	cytosol	98.48	98.48
CDY62196	Canola	cytosol	93.94	91.99
CDX89958	Canola	cytosol	94.55	91.5
CDY40132	Canola	cytosol	94.24	91.2
AT1G52730.1	Thale cress	cytosol	94.55	90.96
Zm00001d046445_P002	Maize	cytosol, extracellular	83.33	80.88
GSMUA_Achr6P00680_001	Banana	cytosol	84.85	80.69
EER90002	Sorghum	cytosol	83.03	80.59
EES04724	Sorghum	cytosol	83.03	80.35
HORVU5Hr1G058430.1	Barley	cytosol	82.12	79.71
TraesCS5D01G201800.1	Wheat	cytosol	82.12	79.71
TraesCS5B01G194400.1	Wheat	cytosol, golgi	82.12	79.71
GSMUA_Achr2P17000_001	Banana	cytosol	82.12	79.24
Os06t0598900-01	Rice	cytosol	81.82	78.95
KRH56652	Soybean	cytosol, endoplasmic reticulum, nucleus	83.94	78.69
TraesCS5A01G189200.2	Wheat	cytosol	82.12	78.32
TraesCS7A01G372500.2	Wheat	cytosol	80.91	78.07
HORVU7Hr1G084630.1	Barley	cytosol	80.91	78.07
KRH03754	Soybean	cytosol	83.03	77.84
TraesCS7D01G350400.1	Wheat	cytosol	80.91	77.62
Os02t0205400-01	Rice	cytosol	80.3	77.49
TraesCS7B01G254800.1	Wheat	cytosol	80.61	76.88
PGSC0003DMT400014299	Potato	cytosol	80.91	75.0
Solyc03g120010.2.1	Tomato	nucleus	80.3	74.44
CDY39650	Canola	cytosol	74.85	73.73
CDY55992	Canola	cytosol	74.24	72.92
CDX81717	Canola	cytosol	74.24	72.92
HORVU5Hr1G035620.1	Barley	cytosol	26.67	72.73
Zm00001d036905_P002	Maize	cytosol	82.73	71.65
HORVU7Hr1G085770.1	Barley	cytosol	24.24	65.57
HORVU1Hr1G058470.4	Barley	cytosol, nucleus, plastid	40.61	48.03
CDY34145	Canola	cytosol, mitochondrion	25.15	25.15
CDY13713	Canola	mitochondrion	24.85	23.84
CDY71621	Canola	mitochondrion	24.55	23.55
CDY03970	Canola	cytosol	25.45	12.35

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078JCY6	InterPro:Apc4_WD40_dom	EnsemblPlants:CDY62165	ProteinID:CDY62165
ProteinID:CDY62165.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00036021001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR44239	PANTHER:PTHR44239:SF1	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EDADEF
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

BnaA05g35670DBnaA05g35670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCY6]

Coordinates

chrLK034107:-:15164..17736

Molecular Weight (calculated)

36084.2 Da

IEP (calculated)

6.144

GRAVY (calculated)

-0.317

Length

330 amino acids

Sequence
(BLAST)

001: MDKKKVAVPL VCHGHSRPVV DLFYSPITPD GFFLISASKD SHPMLRNGET GDWIGTFEGH KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE
101: HKHIVRACAF SEDTKLLITG GFEKILRVFD LNRLDAAATE VDKSPGSIRT LTWLHSDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSSV KFWDANHFGL VKSYDMPCNV ESASLEPKSG EKFVAGGEDM WVRVFDFYTG EEIGCNKGHH GPVHCVRFSP TGESYASGSE DGTIRIWQTT
301: PNHSVDEVAK KIEGFHINKE GKTADKLSDA

Best Arabidopsis Sequence Match ( AT1G52730.1 )
(BLAST)

001: MEKKKVTIPQ VCHGHSRPVV DLFYSPITPD GFFLISASKD SHPMLRNGET GDWIGTFEGH KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE
101: HKHIVRACAF SEDTKSLLTG GFEKILRVFD MNRLDAPPTE VDKSPGSIRT LTWLHSDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG EKFVAGGEDM WVRVFDFYTG EEIGCNKGHH GPVHCVRFTP TGLSYASGSE DGTIRIWQTT
301: PANPEENETS SRRVKHSVDE VSKKIEGFHI NKEGKTAEKP SDT

Arabidopsis Description

AT1G52730 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.