Factsheet for TraesCS5B01G194400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, golgi

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G201800.1	Wheat	cytosol	97.65	97.65
HORVU5Hr1G058430.1	Barley	cytosol	97.65	97.65
TraesCS5A01G189200.2	Wheat	cytosol	97.65	95.95
Os06t0598900-01	Rice	cytosol	88.24	87.72
Zm00001d046445_P002	Maize	cytosol, extracellular	86.47	86.47
EER90002	Sorghum	cytosol	86.47	86.47
TraesCS7B01G254800.1	Wheat	cytosol	85.59	84.1
Bra030366.1-P	Field mustard	cytosol	80.0	82.42
CDY62165	Canola	cytosol	79.71	82.12
GSMUA_Achr2P17000_001	Banana	cytosol	82.06	81.58
GSMUA_Achr6P00680_001	Banana	cytosol	82.94	81.27
CDY61819	Canola	cytosol	78.82	81.21
VIT_11s0016g04710.t01	Wine grape	cytosol	82.06	80.17
AT3G15610.1	Thale cress	cytosol	80.29	80.06
CDY62196	Canola	cytosol	79.12	79.82
Bra018983.1-P	Field mustard	cytosol	79.12	79.82
CDY40132	Canola	cytosol	79.41	79.18
KRH56652	Soybean	cytosol, endoplasmic reticulum, nucleus	81.76	78.98
CDX89958	Canola	cytosol	79.12	78.89
KRH03754	Soybean	cytosol	81.47	78.69
AT1G52730.1	Thale cress	cytosol	78.82	78.13
VIT_09s0002g05790.t01	Wine grape	cytosol	79.12	77.75
Zm00001d036905_P002	Maize	cytosol	85.88	76.64
AT1G15470.1	Thale cress	cytosol	74.71	76.28
CDY39650	Canola	cytosol	75.0	76.12
CDY55992	Canola	cytosol	72.94	73.81
CDX81717	Canola	cytosol	72.94	73.81
Bra026760.1-P	Field mustard	cytosol	72.35	73.21
PGSC0003DMT400014299	Potato	cytosol	75.88	72.47
Solyc06g052000.1.1	Tomato	cytosol	28.53	55.11
TraesCS2B01G539500.1	Wheat	cytosol, mitochondrion	22.94	23.78
TraesCS4B01G164300.1	Wheat	golgi	20.59	21.21

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44239	PANTHER:PTHR44239:SF1	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:TraesCS5B01G194400	EnsemblPlants:TraesCS5B01G194400.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	TIGR:cd00200	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:351456194..351461213

Molecular Weight (calculated)

36868.1 Da

IEP (calculated)

5.397

GRAVY (calculated)

-0.334

Length

340 amino acids

Sequence
(BLAST)

001: MEKKKAAVPL VCHGHSRPVV DLFYSPVTPD GYFLISASKD SNPMLRNGET GDWIGTFEGH KGAVWSCCLD TNALRAASGS ADFSAKVWDA LTGDELHSFE
101: HKHIVRACAF SKDTHLLLTG GMEKILRVYD LNKPDVAPKE LDKSPGSVRT VAWLHNDQTI LSSCTDTGGV RLWDVRSEKI VQTLETKGPV TSAEVSQDGR
201: FITTADGSSV KFWDANHFGL VKSYDMSFTV ESASLEPKSG SKFIAGGEDM WVHVFDFLTG EEITCNKGHH GPVHCVRFAP GGESYASGSE DGTIRIWQLS
301: PANADAEEAV DTNGKPKAGV EEIACKVEGF QIAKEGKAEE

Best Arabidopsis Sequence Match ( AT3G15610.1 )
(BLAST)

001: MEKKKVATPL VCHGHSRPVV DLFYSPITPD GFFLISASKD SQPMLRNGET GDWIGTFEGH KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE
101: HKHIVRACAF SQDTKYLITG GFEKILRVFD LNRLDAPPTE IDKSPGSIRT LTWLHGDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG NKFVAGGEDM WVRLFDFHTG KEIGCNKGHH GPVHCVRFAP TGESYASGSE DGTIRIWQTG
301: PVNPEEISES KPKQSVDEVA RKIEGFHINK EGKTAEKPSD A

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9LW17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.