Factsheet for VIT_09s0002g05790.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P17000_001	Banana	cytosol	82.08	83.04
VIT_11s0016g04710.t01	Wine grape	cytosol	83.24	82.76
GSMUA_Achr6P00680_001	Banana	cytosol	82.08	81.84
Os02t0205400-01	Rice	cytosol	79.77	80.7
EES04724	Sorghum	cytosol	79.48	80.65
KRH56652	Soybean	cytosol, endoplasmic reticulum, nucleus	81.79	80.4
KRH03754	Soybean	cytosol	81.5	80.11
Os06t0598900-01	Rice	cytosol	78.61	79.53
EER90002	Sorghum	cytosol	78.03	79.41
AT1G15470.1	Thale cress	cytosol	76.3	79.28
Zm00001d046445_P002	Maize	cytosol, extracellular	77.75	79.12
TraesCS5B01G194400.1	Wheat	cytosol, golgi	77.75	79.12
HORVU5Hr1G058430.1	Barley	cytosol	77.46	78.82
TraesCS5D01G201800.1	Wheat	cytosol	77.17	78.53
CDY39650	Canola	cytosol	75.72	78.21
TraesCS7A01G372500.2	Wheat	cytosol	77.17	78.07
HORVU7Hr1G084630.1	Barley	cytosol	76.3	77.19
TraesCS5A01G189200.2	Wheat	cytosol	77.17	77.17
TraesCS7D01G350400.1	Wheat	cytosol	76.59	77.03
CDY55992	Canola	cytosol	74.57	76.79
CDX81717	Canola	cytosol	74.28	76.49
Bra026760.1-P	Field mustard	cytosol	74.28	76.49
TraesCS7B01G254800.1	Wheat	cytosol	76.3	76.3
Zm00001d036905_P002	Maize	cytosol	77.75	70.6
HORVU5Hr1G035620.1	Barley	cytosol	23.12	66.12
HORVU7Hr1G085770.1	Barley	cytosol	21.39	60.66
HORVU1Hr1G058470.4	Barley	cytosol, nucleus, plastid	38.44	47.67
VIT_01s0011g06630.t01	Wine grape	cytosol	23.41	24.85

Protein Annotations

EntrezGene:100260049	wikigene:100260049	Gene3D:2.130.10.10	MapMan:35.1	InterPro:Apc4_WD40_dom	ProteinID:CBI36243
ProteinID:CBI36243.3	UniProt:D7U0U7	EMBL:FN596494	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100260049	wikigene:LOC100260049
PFAM:PF00400	PFAM:PF12894	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR44239	PANTHER:PTHR44239:SF1	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC53583	UniParc:UPI00015C8491
ArrayExpress:VIT_09s0002g05790	EnsemblPlantsGene:VIT_09s0002g05790	EnsemblPlants:VIT_09s0002g05790.t01	unigene:Vvi.4802	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002285272	RefSeq:XP_002285272.1	SEG:seg

Description

No Description!

Coordinates

chr9:-:5571375..5583914

Molecular Weight (calculated)

37831.3 Da

IEP (calculated)

6.109

GRAVY (calculated)

-0.410

Length

346 amino acids

Sequence
(BLAST)

001: MDKKKVAVPL VCHGHSRPVV DLFYSPVTPD GFFLISASKD STPMLRNGET GDWIGTFEGH KGAVWSCSLD TNALRAASGS ADFTAKLWDA LTGDELHSFE
101: HKHIVRACAF SEDTHFLLTG GVEKVLRIFD LNRPDAPPRE VENSPGSIRT VAWLHSDQTI LSSCTDNGGV RLWDVRTGKI VHTLETKSPV TSAEVSQDGR
201: YITTADGTTV KFWDANHYGL VKSYNMPCNM ESASLEPKFG NKFIAGGEDM WIHMFDFNTG EEIGCNKGHH GPVHCVRFSP GGESYASGSE DGTIRIWQTG
301: PQNLEEPDSF VSGKVKVVVD EVTRKVEGFH VGKDGKTGNK EKALDG

Best Arabidopsis Sequence Match ( AT3G15610.1 )
(BLAST)

001: MEKKKVATPL VCHGHSRPVV DLFYSPITPD GFFLISASKD SQPMLRNGET GDWIGTFEGH KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE
101: HKHIVRACAF SQDTKYLITG GFEKILRVFD LNRLDAPPTE IDKSPGSIRT LTWLHGDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG NKFVAGGEDM WVRLFDFHTG KEIGCNKGHH GPVHCVRFAP TGESYASGSE DGTIRIWQTG
301: PVNPEEISES KPKQSVDEVA RKIEGFHINK EGKTAEKPSD A

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9LW17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.