Factsheet for VIT_11s0016g04710.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56652	Soybean	cytosol, endoplasmic reticulum, nucleus	86.49	85.51
GSMUA_Achr6P00680_001	Banana	cytosol	85.06	85.3
KRH03754	Soybean	cytosol	85.92	84.94
GSMUA_Achr2P17000_001	Banana	cytosol	82.47	83.92
VIT_09s0002g05790.t01	Wine grape	cytosol	82.76	83.24
TraesCS5D01G201800.1	Wheat	cytosol	80.46	82.35
TraesCS5B01G194400.1	Wheat	cytosol, golgi	80.17	82.06
HORVU5Hr1G058430.1	Barley	cytosol	79.89	81.76
Os06t0598900-01	Rice	cytosol	79.89	81.29
EES04724	Sorghum	cytosol	79.6	81.23
TraesCS5A01G189200.2	Wheat	cytosol	80.75	81.21
EER90002	Sorghum	cytosol	79.31	81.18
HORVU7Hr1G084630.1	Barley	cytosol	79.6	80.99
Zm00001d046445_P002	Maize	cytosol, extracellular	79.02	80.88
Os02t0205400-01	Rice	cytosol	79.31	80.7
TraesCS7A01G372500.2	Wheat	cytosol	79.31	80.7
TraesCS7D01G350400.1	Wheat	cytosol	79.6	80.52
TraesCS7B01G254800.1	Wheat	cytosol	79.31	79.77
Zm00001d036905_P002	Maize	cytosol	78.74	71.92
HORVU5Hr1G035620.1	Barley	cytosol	23.85	68.59
HORVU7Hr1G085770.1	Barley	cytosol	21.55	61.48
HORVU1Hr1G058470.4	Barley	cytosol, nucleus, plastid	40.52	50.54
VIT_01s0011g06630.t01	Wine grape	cytosol	22.13	23.62

Protein Annotations

EntrezGene:100261048	wikigene:100261048	Gene3D:2.130.10.10	MapMan:35.1	ProteinID:CBI28146	ProteinID:CBI28146.3
UniProt:D7TBW1	EMBL:FN595756	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100261048	wikigene:LOC100261048	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44239	PANTHER:PTHR44239:SF1	SMART:SM00320	SUPFAM:SSF50978
TIGR:TC58371	UniParc:UPI00015C8A49	ArrayExpress:VIT_11s0016g04710	EnsemblPlantsGene:VIT_11s0016g04710	EnsemblPlants:VIT_11s0016g04710.t01	unigene:Vvi.11725
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002284993
RefSeq:XP_002284993.1	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:3992761..4002911

Molecular Weight (calculated)

37785.2 Da

IEP (calculated)

5.684

GRAVY (calculated)

-0.313

Length

348 amino acids

Sequence
(BLAST)

001: MEKKRVAVPL VCHGHSRPVV DLFYSPITPD GFFLISASKD SSPMLRNGET GDWIGTFEGH KGAVWSCCLD TNALRAASGS ADFTAKIWDA LTGDELHSFE
101: HKHIVRACAF SEDTHSLLTG GVEKILRIFD LNRPDAPPRE VDNSPGSVRT VAWLHSDQTI LSSCTDIGGV RLWDVRSGKI VQTLETNSSV TSAEVSQDGR
201: YIITADGSSV KFWDANHFGL VKSYKMPCTV ESASLEPKNG DKFIAGGEDM WIRLFDFHTG EEIACNKGHH GPVHCVRFSP GGESYASGSE DGTIRIWQTG
301: PLTHDNNEMF RANGLTGKVK VAAEEVSCKI EGFHIADEGK AGEEAGTA

Best Arabidopsis Sequence Match ( AT1G52730.1 )
(BLAST)

001: MEKKKVTIPQ VCHGHSRPVV DLFYSPITPD GFFLISASKD SHPMLRNGET GDWIGTFEGH KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE
101: HKHIVRACAF SEDTKSLLTG GFEKILRVFD MNRLDAPPTE VDKSPGSIRT LTWLHSDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG EKFVAGGEDM WVRVFDFYTG EEIGCNKGHH GPVHCVRFTP TGLSYASGSE DGTIRIWQTT
301: PANPEENETS SRRVKHSVDE VSKKIEGFHI NKEGKTAEKP SDT

Arabidopsis Description

AT1G52730 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.