Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0598900-01 | Rice | cytosol | 91.76 | 91.23 |
| TraesCS7A01G372500.2 | Wheat | cytosol | 87.35 | 86.84 |
| HORVU7Hr1G084630.1 | Barley | cytosol | 87.35 | 86.84 |
| TraesCS7D01G350400.1 | Wheat | cytosol | 87.65 | 86.63 |
| TraesCS5B01G194400.1 | Wheat | cytosol, golgi | 86.47 | 86.47 |
| TraesCS7B01G254800.1 | Wheat | cytosol | 87.94 | 86.42 |
| HORVU5Hr1G058430.1 | Barley | cytosol | 85.88 | 85.88 |
| Zm00001d036905_P002 | Maize | cytosol | 96.18 | 85.83 |
| TraesCS5D01G201800.1 | Wheat | cytosol | 85.59 | 85.59 |
| TraesCS5A01G189200.2 | Wheat | cytosol | 85.88 | 84.39 |
| Bra030366.1-P | Field mustard | cytosol | 81.18 | 83.64 |
| CDY62165 | Canola | cytosol | 80.88 | 83.33 |
| CDY61819 | Canola | cytosol | 80.0 | 82.42 |
| GSMUA_Achr6P00680_001 | Banana | cytosol | 83.24 | 81.56 |
| CDY62196 | Canola | cytosol | 80.29 | 81.01 |
| Bra018983.1-P | Field mustard | cytosol | 80.29 | 81.01 |
| GSMUA_Achr2P17000_001 | Banana | cytosol | 81.47 | 80.99 |
| AT1G52730.1 | Thale cress | cytosol | 81.47 | 80.76 |
| AT3G15610.1 | Thale cress | cytosol | 80.29 | 80.06 |
| CDX89958 | Canola | cytosol | 80.0 | 79.77 |
| KRH56652 | Soybean | cytosol, endoplasmic reticulum, nucleus | 82.35 | 79.55 |
| CDY40132 | Canola | cytosol | 79.71 | 79.47 |
| VIT_11s0016g04710.t01 | Wine grape | cytosol | 80.88 | 79.02 |
| KRH03754 | Soybean | cytosol | 81.76 | 78.98 |
| VIT_09s0002g05790.t01 | Wine grape | cytosol | 79.12 | 77.75 |
| HORVU5Hr1G035620.1 | Barley | cytosol | 27.06 | 76.03 |
| AT1G15470.1 | Thale cress | cytosol | 72.94 | 74.47 |
| CDY39650 | Canola | cytosol | 72.35 | 73.43 |
| CDY55992 | Canola | cytosol | 72.06 | 72.92 |
| CDX81717 | Canola | cytosol | 71.76 | 72.62 |
| PGSC0003DMT400014299 | Potato | cytosol | 75.88 | 72.47 |
| Bra026760.1-P | Field mustard | cytosol | 71.47 | 72.32 |
| HORVU7Hr1G085770.1 | Barley | cytosol | 24.12 | 67.21 |
| Solyc06g052000.1.1 | Tomato | cytosol | 27.94 | 53.98 |
| HORVU1Hr1G058470.4 | Barley | cytosol, nucleus, plastid | 42.65 | 51.97 |
| Zm00001d018873_P001 | Maize | plasma membrane | 22.65 | 23.62 |
| Zm00001d007900_P003 | Maize | mitochondrion | 22.35 | 23.31 |
Protein Annotations
| EntrezGene:100274502 | Gene3D:2.130.10.10 | MapMan:35.1 | ProteinID:AQL04285.1 | ProteinID:AQL04289.1 | UniProt:B4G1G6 |
| EMBL:BT043204 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44239 |
| PANTHER:PTHR44239:SF1 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI00017B74A9 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | EnsemblPlantsGene:Zm00001d046445 | EnsemblPlants:Zm00001d046445_P002 | EnsemblPlants:Zm00001d046445_T002 |
| SEG:seg | : | : | : | : | : |
Description
Transducin/WD40 repeat-like superfamily protein
Coordinates
chr9:-:90220283..90227435
Molecular Weight (calculated)
36938.2 Da
IEP (calculated)
5.859
GRAVY (calculated)
-0.332
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKKVAIPL VCHGHSRPVV DLFYSPVTPD GYFLISASKD TNPMLRNGET GDWIGTFQGH KGAVWSCCLD RNALRAASAS ADFSAKVWDA LTGDELHSFE
101: HKHIVRACAF SEDTHLLLTG GMEKILRVYD MNRPDAAPRE LDKSPGSVRT AAWLHSDQTI LSSCTDMGGV RLWDVRTGKI VQTLETKASV TSAEVSQDGR
201: FITTADGSSV KFWDANHFGL VKSYDMPCNV ESASLEPKSG SKFVAGGEDL WVHVFDFFTG EEIACNKGHH GPVHCVRFAP CGESYASGSE DGTIRIWQLS
301: PANADDNEVA NANGKTTAGV NEVTTKIEGF HIPKEGQTEG
101: HKHIVRACAF SEDTHLLLTG GMEKILRVYD MNRPDAAPRE LDKSPGSVRT AAWLHSDQTI LSSCTDMGGV RLWDVRTGKI VQTLETKASV TSAEVSQDGR
201: FITTADGSSV KFWDANHFGL VKSYDMPCNV ESASLEPKSG SKFVAGGEDL WVHVFDFFTG EEIACNKGHH GPVHCVRFAP CGESYASGSE DGTIRIWQLS
301: PANADDNEVA NANGKTTAGV NEVTTKIEGF HIPKEGQTEG
001: MEKKKVTIPQ VCHGHSRPVV DLFYSPITPD GFFLISASKD SHPMLRNGET GDWIGTFEGH KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE
101: HKHIVRACAF SEDTKSLLTG GFEKILRVFD MNRLDAPPTE VDKSPGSIRT LTWLHSDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG EKFVAGGEDM WVRVFDFYTG EEIGCNKGHH GPVHCVRFTP TGLSYASGSE DGTIRIWQTT
301: PANPEENETS SRRVKHSVDE VSKKIEGFHI NKEGKTAEKP SDT
101: HKHIVRACAF SEDTKSLLTG GFEKILRVFD MNRLDAPPTE VDKSPGSIRT LTWLHSDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG EKFVAGGEDM WVRVFDFYTG EEIGCNKGHH GPVHCVRFTP TGLSYASGSE DGTIRIWQTT
301: PANPEENETS SRRVKHSVDE VSKKIEGFHI NKEGKTAEKP SDT
Arabidopsis Description
AT1G52730 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSS7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.