Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046445_P002 | Maize | cytosol, extracellular | 91.23 | 91.76 |
| EER90002 | Sorghum | cytosol | 91.23 | 91.76 |
| TraesCS7A01G372500.2 | Wheat | cytosol | 88.6 | 88.6 |
| TraesCS7D01G350400.1 | Wheat | cytosol | 88.89 | 88.37 |
| HORVU7Hr1G084630.1 | Barley | cytosol | 88.3 | 88.3 |
| TraesCS5B01G194400.1 | Wheat | cytosol, golgi | 87.72 | 88.24 |
| TraesCS5D01G201800.1 | Wheat | cytosol | 87.72 | 88.24 |
| HORVU5Hr1G058430.1 | Barley | cytosol | 87.43 | 87.94 |
| TraesCS7B01G254800.1 | Wheat | cytosol | 88.89 | 87.86 |
| TraesCS5A01G189200.2 | Wheat | cytosol | 87.72 | 86.71 |
| Os02t0205400-01 | Rice | cytosol | 84.5 | 84.5 |
| Bra030366.1-P | Field mustard | cytosol | 79.24 | 82.12 |
| GSMUA_Achr6P00680_001 | Banana | cytosol | 83.04 | 81.84 |
| CDY62165 | Canola | cytosol | 78.95 | 81.82 |
| GSMUA_Achr2P17000_001 | Banana | cytosol | 81.29 | 81.29 |
| CDY61819 | Canola | cytosol | 78.07 | 80.91 |
| Zm00001d036905_P002 | Maize | cytosol | 89.77 | 80.58 |
| CDY62196 | Canola | cytosol | 78.95 | 80.12 |
| Bra018983.1-P | Field mustard | cytosol | 78.95 | 80.12 |
| VIT_11s0016g04710.t01 | Wine grape | cytosol | 81.29 | 79.89 |
| KRH56652 | Soybean | cytosol, endoplasmic reticulum, nucleus | 82.16 | 79.83 |
| AT3G15610.1 | Thale cress | cytosol | 78.95 | 79.18 |
| KRH03754 | Soybean | cytosol | 81.29 | 78.98 |
| CDX89958 | Canola | cytosol | 78.66 | 78.89 |
| VIT_09s0002g05790.t01 | Wine grape | cytosol | 79.53 | 78.61 |
| HORVU5Hr1G035620.1 | Barley | cytosol | 27.78 | 78.51 |
| AT1G52730.1 | Thale cress | cytosol | 78.66 | 78.43 |
| CDY40132 | Canola | cytosol | 78.07 | 78.3 |
| AT1G15470.1 | Thale cress | cytosol | 72.22 | 74.17 |
| CDY39650 | Canola | cytosol | 71.93 | 73.43 |
| CDY55992 | Canola | cytosol | 71.34 | 72.62 |
| CDX81717 | Canola | cytosol | 71.05 | 72.32 |
| PGSC0003DMT400014299 | Potato | cytosol | 75.15 | 72.19 |
| Bra026760.1-P | Field mustard | cytosol | 70.76 | 72.02 |
| HORVU7Hr1G085770.1 | Barley | cytosol | 24.56 | 68.85 |
| Solyc06g052000.1.1 | Tomato | cytosol | 27.78 | 53.98 |
| HORVU1Hr1G058470.4 | Barley | cytosol, nucleus, plastid | 43.86 | 53.76 |
| Os11t0606300-01 | Rice | cytosol | 5.85 | 29.41 |
| Os08t0308100-01 | Rice | nucleus | 22.81 | 23.93 |
| Os05t0256000-01 | Rice | nucleus, plasma membrane | 22.51 | 23.62 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | ProteinID:BAF19911.1 | ProteinID:BAS98481.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | EnsemblPlantsGene:Os06g0598900 |
| EnsemblPlants:Os06t0598900-01 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR44239 | PANTHER:PTHR44239:SF1 | UniProt:Q0DB62 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0000E12895 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : |
Description
OsWD40-130Similar to Serine-threonine kinase receptor-associated protein (UNR-interacting protein) (WD-40 repeat protein PT-WD) (MAP activator with WD repeats). (Os06t0598900-01);Hypothetical gene. (Os06t0598900-02)
Coordinates
chr6:-:23613188..23621153
Molecular Weight (calculated)
37265.6 Da
IEP (calculated)
5.533
GRAVY (calculated)
-0.360
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKKVAVPL VCHGHSRPVV DLFYSPVTPD GYFLISASKD GNPMLRNGET GDWIGTFQGH KGAVWSCCLD TNALRAASGS ADFSAKVWDA LTGDELHSFE
101: HKHIVRACAF SEDTHLLLTG GVEKILRVYD MNRPDAAPRE LDKAPGNVRT VAWLHSDQTI LSSCSDMGGV RLWDVRTGKI VQTLETKAPV TSAEVSQDSR
201: FITTADGSSV KFWDANHFGL VKSYDMPCTV ESASLEPKSG SKFIVGGEDM WVHVFDFFTG EEITCNKGHH GPVHCVRFAP GGESYASGSE DGTIRIWQLS
301: PPNADDNEAV NSNGKPTVGV NEVARKIEGF HIPKEEEQQA EG
101: HKHIVRACAF SEDTHLLLTG GVEKILRVYD MNRPDAAPRE LDKAPGNVRT VAWLHSDQTI LSSCSDMGGV RLWDVRTGKI VQTLETKAPV TSAEVSQDSR
201: FITTADGSSV KFWDANHFGL VKSYDMPCTV ESASLEPKSG SKFIVGGEDM WVHVFDFFTG EEITCNKGHH GPVHCVRFAP GGESYASGSE DGTIRIWQLS
301: PPNADDNEAV NSNGKPTVGV NEVARKIEGF HIPKEEEQQA EG
001: MEKKKVTIPQ VCHGHSRPVV DLFYSPITPD GFFLISASKD SHPMLRNGET GDWIGTFEGH KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE
101: HKHIVRACAF SEDTKSLLTG GFEKILRVFD MNRLDAPPTE VDKSPGSIRT LTWLHSDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG EKFVAGGEDM WVRVFDFYTG EEIGCNKGHH GPVHCVRFTP TGLSYASGSE DGTIRIWQTT
301: PANPEENETS SRRVKHSVDE VSKKIEGFHI NKEGKTAEKP SDT
101: HKHIVRACAF SEDTKSLLTG GFEKILRVFD MNRLDAPPTE VDKSPGSIRT LTWLHSDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG EKFVAGGEDM WVRVFDFYTG EEIGCNKGHH GPVHCVRFTP TGLSYASGSE DGTIRIWQTT
301: PANPEENETS SRRVKHSVDE VSKKIEGFHI NKEGKTAEKP SDT
Arabidopsis Description
AT1G52730 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSS7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.