Factsheet for Os08t0308100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

nucleus: 18022940
cytosol: 19685898
nucleus: 23777608
plasma membrane: 27800704
plastid: 27992503

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0256000-01	Rice	nucleus, plasma membrane	97.85	97.85
Zm00001d018873_P001	Maize	plasma membrane	91.1	91.1
Zm00001d007900_P003	Maize	mitochondrion	91.1	91.1
EER98031	Sorghum	mitochondrion	90.18	90.18
TraesCS4D01G149800.1	Wheat	plastid	89.57	89.57
TraesCS2B01G539500.1	Wheat	cytosol, mitochondrion	89.26	88.72
HORVU4Hr1G040280.4	Barley	cytosol, mitochondrion	89.88	86.43
TraesCS4A01G166500.1	Wheat	nucleus	89.57	86.14
TraesCS2A01G511400.1	Wheat	cytosol, mitochondrion	85.58	85.85
Os11t0606300-01	Rice	cytosol	17.79	85.29
TraesCS4B01G164300.1	Wheat	golgi	85.28	84.24
KRH74580	Soybean	endoplasmic reticulum	82.82	82.82
KRH40031	Soybean	endoplasmic reticulum	82.82	82.82
GSMUA_Achr2P07570_001	Banana	cytosol	80.98	82.24
KRH23773	Soybean	endoplasmic reticulum	81.9	81.9
VIT_01s0011g06630.t01	Wine grape	cytosol	80.98	80.98
PGSC0003DMT400023872	Potato	cytosol, mitochondrion	80.06	80.06
Solyc11g017070.1.1	Tomato	nucleus	78.22	78.22
AT2G46280.2	Thale cress	mitochondrion	78.22	77.74
CDY34145	Canola	cytosol, mitochondrion	77.91	76.97
CDY13713	Canola	mitochondrion	78.83	74.71
Bra025277.1-P	Field mustard	mitochondrion	78.53	74.42
CDY71621	Canola	mitochondrion	78.22	74.13
AT2G46290.1	Thale cress	cytosol	76.69	70.42
GSMUA_Achr11P...	Banana	cytosol	53.37	58.78
Bra033012.1-P	Field mustard	cytosol	77.91	39.87
CDY03970	Canola	cytosol	77.91	37.35
Os06t0598900-01	Rice	cytosol	23.93	22.81
Os02t0205400-01	Rice	cytosol	23.62	22.51

Protein Annotations

MapMan:17.4.1.3.9	Gene3D:2.130.10.10	EntrezGene:4345234	ProteinID:AAQ56413.1	ProteinID:AAQ56424.1	ProteinID:BAC92579.1
ProteinID:BAC92643.1	ProteinID:BAF23422.1	ProteinID:BAT04837.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0001732	GO:GO:0002183
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0033290	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	HAMAP:MF_03008	EnsemblPlantsGene:Os08g0308100	EnsemblPlants:Os08t0308100-01	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19877	UniProt:Q6YS69	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00001D1BC9	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_015650887.1	InterPro:eIF3i	:	:	:

Description

EUKARYOTIC INITIATION FACTOR 3I, "eukaryotic translation initiation factor 3, subunit i"Similar to TGF-beta receptor-interacting protein 1. (Os08t0308100-01)

Coordinates

chr8:-:12906966..12913661

Molecular Weight (calculated)

36380.8 Da

IEP (calculated)

6.353

GRAVY (calculated)

-0.428

Length

326 amino acids

Sequence
(BLAST)

001: MRPILMKGHE RPLTFLRYNR DGDLLFSCAK DHTPNVWFAD NGDRLGTYRG HNGAVWSCDV SRDSTRLITG SADQTAKLWD VQTGRELFTF RFDAPARSVE
101: FAIGDGLAVI TTDNFMENVP TAQVKRIAED PDDQSEESLL VITGIKGRIN RAVWGPLNRT IITAGEDATI RIWDTETGQC LKESDKEQGH QKTITSLSKS
201: ADWSHFLTGS LDKSAKLWDT RTLTLIKTYV TERPVNAVDI SPLLDHVVIG GGQDAMNVTM TDRRAGKFEA KFFHKILQEE IGGVKGHFGP INALAFNPDG
301: RSFSSGGEDG YVRLHHFDSD YFNIKI

Best Arabidopsis Sequence Match ( AT2G46280.1 )
(BLAST)

001: MRPILMKGHE RPLTFLRYNR EGDLLFSCAK DHTPTLWFAD NGERLGTYRG HNGAVWCCDV SRDSSRLITG SADQTAKLWD VKSGKELFTF KFNAPTRSVD
101: FAVGDRLAVI TTDHFVDRTA AIHVKRIAED PEEQDAESVL VLHCPDGKKR INRAVWGPLN QTIVSGGEDK VIRIWDAETG KLLKQSDEEV GHKKDITSLC
201: KAADDSHFLT GSLDKTAKLW DMRTLTLLKT YTTVVPVNAV SLSPLLNHVV LGGGQDASAV TTTDHRAGKF EAKFYDKILQ EEIGGVKGHF GPINALAFNP
301: DGKSFSSGGE DGYVRLHHFD SDYFNIKI

Arabidopsis Description

TIF3I1Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/Swiss-Prot;Acc:Q38884]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.