Factsheet for TraesCS4A01G166500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G149800.1	Wheat	plastid	95.58	99.39
HORVU4Hr1G040280.4	Barley	cytosol, mitochondrion	98.53	98.53
TraesCS4B01G164300.1	Wheat	golgi	89.68	92.12
TraesCS2A01G511400.1	Wheat	cytosol, mitochondrion	87.32	91.08
Zm00001d018873_P001	Maize	plasma membrane	86.14	89.57
Zm00001d007900_P003	Maize	mitochondrion	86.14	89.57
Os08t0308100-01	Rice	nucleus	86.14	89.57
EER98031	Sorghum	mitochondrion	85.84	89.26
Os05t0256000-01	Rice	nucleus, plasma membrane	85.84	89.26
KRH74580	Soybean	endoplasmic reticulum	77.88	80.98
VIT_01s0011g06630.t01	Wine grape	cytosol	77.29	80.37
GSMUA_Achr2P07570_001	Banana	cytosol	75.81	80.06
KRH40031	Soybean	endoplasmic reticulum	76.99	80.06
KRH23773	Soybean	endoplasmic reticulum	76.99	80.06
PGSC0003DMT400023872	Potato	cytosol, mitochondrion	76.11	79.14
Solyc11g017070.1.1	Tomato	nucleus	74.34	77.3
AT2G46280.2	Thale cress	mitochondrion	74.04	76.52
CDY34145	Canola	cytosol, mitochondrion	73.45	75.45
CDY13713	Canola	mitochondrion	74.63	73.55
Bra025277.1-P	Field mustard	mitochondrion	74.63	73.55
CDY71621	Canola	mitochondrion	74.04	72.97
AT2G46290.1	Thale cress	cytosol	73.75	70.42
GSMUA_Achr11P...	Banana	cytosol	49.26	56.42
Bra033012.1-P	Field mustard	cytosol	73.45	39.09
CDY03970	Canola	cytosol	73.45	36.62
TraesCS5A01G189200.2	Wheat	cytosol	22.42	21.97
TraesCS7A01G372500.2	Wheat	cytosol	22.12	21.93

Protein Annotations

MapMan:17.4.1.3.9	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
HAMAP:MF_03008	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19877	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS4A01G166500	EnsemblPlants:TraesCS4A01G166500.1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	InterPro:eIF3i

Description

No Description!

Coordinates

chr4A:+:403383616..403387848

Molecular Weight (calculated)

37678.6 Da

IEP (calculated)

6.969

GRAVY (calculated)

-0.394

Length

339 amino acids

Sequence
(BLAST)

001: MRPILMKGHE RPLTFLKYNR DGDLLFSCAK DHTPTVWYAD NGDRLGTYRG HNGAVWSCDV SRHSARLITG SADQTAKLWD VKTGKELFTF RFDAPARSVD
101: LAIGDHLAVI TTDSFMGNMP TAQVKRIAED LQDQTEESAL VISGITGRIN RAVWGPGNRT IITAGEDATI RIWDSETGKL LKESDKEVGH QKAISSLSKS
201: LDWSHFLTGS LDKSAKLWDA RTLTLIKTYV TERPVNAVDI SPTLDHVVIG GGQDAMNVTM TDRRAGKFEA KFFHKILEEE IGGVKGHFGP INALAFNPDG
301: RSFSSGGEDG YVRLHHFDPE YFNIKMLQLR DLPSTLERT

Best Arabidopsis Sequence Match ( AT2G46290.1 )
(BLAST)

001: MTIECVNPEG LRFNQMKSSS HQTLETRMRP ILMKGHERPL TFLRYNRNGD LLFSCAKDHT PTVWFADNGE RLGTYRGHSG AVWCCDISRD SSRLITGSAD
101: QTAKLWDVKS GKELFTFKFG APARSVDFSV GDHLAVITTD HFVGTSSAIH VKRIAEDPED QVGDSVLVLQ SPDGKKKINR AVWGPLNQTI VSGGEDAAIR
201: IWDAETGKLL KQSDEEVGHK EAITSLCKAA DDSHFLTGSH DKTAKLWDMR TLTLIKTYTT VVPVNAVAMS PLLNHVVLGG GQDASAVTTT DHRAGKFEAK
301: FYDTILQEEI GGVKGHFGPI NALAFSPDGK SFSSGGEDGY VRLHHFDSNY FNIKI

Arabidopsis Description

Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/TrEMBL;Acc:A0A178VR74]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.