Factsheet for Bra033012.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34145	Canola	cytosol, mitochondrion	51.81	100.0
Bra025277.1-P	Field mustard	mitochondrion	47.88	88.66
AT2G46280.2	Thale cress	mitochondrion	44.9	87.2
PGSC0003DMT400023872	Potato	cytosol, mitochondrion	43.17	84.36
KRH74580	Soybean	endoplasmic reticulum	43.17	84.36
Solyc11g017070.1.1	Tomato	nucleus	42.54	83.13
VIT_01s0011g06630.t01	Wine grape	cytosol	42.07	82.21
KRH23773	Soybean	endoplasmic reticulum	42.07	82.21
KRH40031	Soybean	endoplasmic reticulum	41.76	81.6
AT2G46290.1	Thale cress	cytosol	43.8	78.59
GSMUA_Achr2P07570_001	Banana	cytosol	39.56	78.5
Os08t0308100-01	Rice	nucleus	39.87	77.91
Zm00001d018873_P001	Maize	plasma membrane	39.56	77.3
Zm00001d007900_P003	Maize	mitochondrion	39.4	76.99
Os05t0256000-01	Rice	nucleus, plasma membrane	39.25	76.69
EER98031	Sorghum	mitochondrion	39.09	76.38
TraesCS4D01G149800.1	Wheat	plastid	38.93	76.07
TraesCS2B01G539500.1	Wheat	cytosol, mitochondrion	38.78	75.3
Os11t0606300-01	Rice	cytosol	8.01	75.0
HORVU4Hr1G040280.4	Barley	cytosol, mitochondrion	39.09	73.45
TraesCS4A01G166500.1	Wheat	nucleus	39.09	73.45
TraesCS2A01G511400.1	Wheat	cytosol, mitochondrion	37.36	73.23
TraesCS4B01G164300.1	Wheat	golgi	36.58	70.61
GSMUA_Achr11P...	Banana	cytosol	26.22	56.42
CDY03970	Canola	cytosol	57.3	53.68
Bra030366.1-P	Field mustard	cytosol	13.34	25.76
Bra018983.1-P	Field mustard	cytosol	13.03	24.63
Bra026760.1-P	Field mustard	cytosol	12.4	23.51

Protein Annotations

MapMan:15.3.4.1.4	MapMan:17.4.1.3.9	Gene3D:2.130.10.10	Gene3D:2.30.30.140	EnsemblPlantsGene:Bra033012	EnsemblPlants:Bra033012.1
EnsemblPlants:Bra033012.1-P	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412
GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0033290	InterPro:IPR001680
InterPro:IPR010750	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4EW29	HAMAP:MF_03008	PFAM:PF00400
PFAM:PF07039	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS51518
InterPro:SGF29_tudor-like_dom	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00025455DB	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:eIF3i	SEG:seg	:

Description

AT2G46280 (E=2e-170) TRIP-1, TIF3I1 | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1); nucleotide binding / protein binding

Coordinates

chrA02:+:21919404..21931474

Molecular Weight (calculated)

70978.9 Da

IEP (calculated)

6.382

GRAVY (calculated)

-0.561

Length

637 amino acids

Sequence
(BLAST)

001: MSSTPDITGI LENTKELDRL RKEQEEVLVE VNKIHKKLRS SPEVVEKPGD TSLSQLKNLF IQAKELSESE VTVSNIRLAQ LDSLLPSGQQ RGKLEVAEGN
101: GLKRKRMKAG SDVTRVPPSI RNQMKAYASL KGEQVAARMT ADDAEQDEWL VVKVIHFDRE TKDEKETDVT LLYDDASVVT RCPPDRRVEV LDEESGDDEE
201: GGGQRTYKLP MSCILPFPKR NDPSTTQEFL PGKHVLAVYP GTTALYKATV VSTPRKRKSD EYLLEFDDDE ENGALPQRTV PFHKVVALPE GHRQSRSCDK
301: ERAFKEKMRP ILMKGHERPL TFLRYNRDGD MLFSCAKDHT PTLWYADNGE RHGTFRGHNG AVWCCDVSRD SLRLITGSAD QSAKLWDVKT GQQLFSFKFG
401: SPARSVDFAL GDKLAVITTD PFMERTSAIH VKRIAEDPED QVSESVLVLE SPNGRKRINR AVWGPLNQTI VSGGEDAVLR IWDAETGKLL KESDSEVGHK
501: NTITSLTKSA DDSHFITGSL DKTAKACLWD MRTLTLLKTY VSGVPVNAVS MSPLLDHVVL GGGQDASAVT TTDHRAGKFE AKFYDKILQE EIGGVKGHFG
601: PINALAFNPD GKSFSSGGED GYVRLHHFDS DYFNIRI

Best Arabidopsis Sequence Match ( AT2G46290.1 )
(BLAST)

001: MTIECVNPEG LRFNQMKSSS HQTLETRMRP ILMKGHERPL TFLRYNRNGD LLFSCAKDHT PTVWFADNGE RLGTYRGHSG AVWCCDISRD SSRLITGSAD
101: QTAKLWDVKS GKELFTFKFG APARSVDFSV GDHLAVITTD HFVGTSSAIH VKRIAEDPED QVGDSVLVLQ SPDGKKKINR AVWGPLNQTI VSGGEDAAIR
201: IWDAETGKLL KQSDEEVGHK EAITSLCKAA DDSHFLTGSH DKTAKLWDMR TLTLIKTYTT VVPVNAVAMS PLLNHVVLGG GQDASAVTTT DHRAGKFEAK
301: FYDTILQEEI GGVKGHFGPI NALAFSPDGK SFSSGGEDGY VRLHHFDSNY FNIKI

Arabidopsis Description

Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/TrEMBL;Acc:A0A178VR74]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.