Factsheet for TraesCS2B01G539500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G511400.1	Wheat	cytosol, mitochondrion	93.6	94.46
Os08t0308100-01	Rice	nucleus	88.72	89.26
Os05t0256000-01	Rice	nucleus, plasma membrane	88.11	88.65
Zm00001d018873_P001	Maize	plasma membrane	87.8	88.34
Zm00001d007900_P003	Maize	mitochondrion	87.8	88.34
TraesCS4B01G164300.1	Wheat	golgi	88.72	88.18
EER98031	Sorghum	mitochondrion	87.5	88.04
KRH74580	Soybean	endoplasmic reticulum	80.49	80.98
VIT_01s0011g06630.t01	Wine grape	cytosol	79.88	80.37
KRH40031	Soybean	endoplasmic reticulum	79.57	80.06
KRH23773	Soybean	endoplasmic reticulum	79.27	79.75
PGSC0003DMT400023872	Potato	cytosol, mitochondrion	78.66	79.14
GSMUA_Achr2P07570_001	Banana	cytosol	77.44	79.13
Solyc11g017070.1.1	Tomato	nucleus	76.83	77.3
AT2G46280.2	Thale cress	mitochondrion	75.3	75.3
CDY34145	Canola	cytosol, mitochondrion	75.3	74.85
CDY13713	Canola	mitochondrion	75.91	72.38
Bra025277.1-P	Field mustard	mitochondrion	75.91	72.38
CDY71621	Canola	mitochondrion	75.3	71.8
AT2G46290.1	Thale cress	cytosol	75.0	69.3
GSMUA_Achr11P...	Banana	cytosol	51.22	56.76
Bra033012.1-P	Field mustard	cytosol	75.3	38.78
CDY03970	Canola	cytosol	75.3	36.32
TraesCS5B01G194400.1	Wheat	cytosol, golgi	23.78	22.94
TraesCS7B01G254800.1	Wheat	cytosol	22.87	21.68

Protein Annotations

MapMan:17.4.1.3.9	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
HAMAP:MF_03008	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19877	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS2B01G539500	EnsemblPlants:TraesCS2B01G539500.1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	InterPro:eIF3i

Description

No Description!

Coordinates

chr2B:-:734494968..734499989

Molecular Weight (calculated)

36397.0 Da

IEP (calculated)

7.407

GRAVY (calculated)

-0.408

Length

328 amino acids

Sequence
(BLAST)

001: MRPVLMKGHE RPLTFLKYNR DGDLLFSCAK DHTPTVWYAS NGDRLGTYRG HNGAVWSCDV SRHSTRLITG SADQTAKLWD VQTGRELFTF RFDAPARSVD
101: FAIGDHLAVI TTDSFMGKTP TAQVKRIAED IQDRTETEES ALVISGITGR INRAVWGPGN RTIITAGEDA TIRIWDSETG KLLKESDKEA GHQKAISSLS
201: KSLDWSHFLT GSLDKSAKLW DARTLTLIKT YVTERPVNAV DMSPILDNVV IGGGQDAMNV TMTDRRAGKF EAKFFHKILQ EEIGGVKGHF GPINALAFNP
301: DGKSFSSGGE DGYVRLHHFD PEYFNIKM

Best Arabidopsis Sequence Match ( AT2G46290.1 )
(BLAST)

001: MTIECVNPEG LRFNQMKSSS HQTLETRMRP ILMKGHERPL TFLRYNRNGD LLFSCAKDHT PTVWFADNGE RLGTYRGHSG AVWCCDISRD SSRLITGSAD
101: QTAKLWDVKS GKELFTFKFG APARSVDFSV GDHLAVITTD HFVGTSSAIH VKRIAEDPED QVGDSVLVLQ SPDGKKKINR AVWGPLNQTI VSGGEDAAIR
201: IWDAETGKLL KQSDEEVGHK EAITSLCKAA DDSHFLTGSH DKTAKLWDMR TLTLIKTYTT VVPVNAVAMS PLLNHVVLGG GQDASAVTTT DHRAGKFEAK
301: FYDTILQEEI GGVKGHFGPI NALAFSPDGK SFSSGGEDGY VRLHHFDSNY FNIKI

Arabidopsis Description

Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/TrEMBL;Acc:A0A178VR74]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.