Factsheet for Os05t0256000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

nucleus: 23777608
plasma membrane: 27800704

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0308100-01	Rice	nucleus	97.85	97.85
Zm00001d018873_P001	Maize	plasma membrane	89.57	89.57
Zm00001d007900_P003	Maize	mitochondrion	89.57	89.57
TraesCS4D01G149800.1	Wheat	plastid	89.26	89.26
EER98031	Sorghum	mitochondrion	88.96	88.96
TraesCS2B01G539500.1	Wheat	cytosol, mitochondrion	88.65	88.11
HORVU4Hr1G040280.4	Barley	cytosol, mitochondrion	89.57	86.14
TraesCS4A01G166500.1	Wheat	nucleus	89.26	85.84
TraesCS2A01G511400.1	Wheat	cytosol, mitochondrion	85.28	85.54
Os11t0606300-01	Rice	cytosol	17.79	85.29
TraesCS4B01G164300.1	Wheat	golgi	84.97	83.94
KRH40031	Soybean	endoplasmic reticulum	82.21	82.21
GSMUA_Achr2P07570_001	Banana	cytosol	80.67	81.93
KRH74580	Soybean	endoplasmic reticulum	81.9	81.9
KRH23773	Soybean	endoplasmic reticulum	81.29	81.29
VIT_01s0011g06630.t01	Wine grape	cytosol	80.37	80.37
PGSC0003DMT400023872	Potato	cytosol, mitochondrion	79.45	79.45
Solyc11g017070.1.1	Tomato	nucleus	78.22	78.22
AT2G46280.2	Thale cress	mitochondrion	77.3	76.83
CDY34145	Canola	cytosol, mitochondrion	76.69	75.76
CDY13713	Canola	mitochondrion	78.22	74.13
Bra025277.1-P	Field mustard	mitochondrion	78.22	74.13
CDY71621	Canola	mitochondrion	76.99	72.97
AT2G46290.1	Thale cress	cytosol	76.07	69.86
GSMUA_Achr11P...	Banana	cytosol	52.76	58.11
Bra033012.1-P	Field mustard	cytosol	76.69	39.25
CDY03970	Canola	cytosol	76.69	36.76
Os06t0598900-01	Rice	cytosol	23.62	22.51
Os02t0205400-01	Rice	cytosol	23.31	22.22

Protein Annotations

MapMan:17.4.1.3.9	Gene3D:2.130.10.10	EntrezGene:4338229	ProteinID:AAV31388.1	EMBL:AK104927	ProteinID:BAF16950.1
ProteinID:BAS93047.1	ProteinID:EEE63021.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016282	GO:GO:0019538	GO:GO:0033290	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
HAMAP:MF_03008	EnsemblPlantsGene:Os05g0256000	EnsemblPlants:Os05t0256000-01	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19877	UniProt:Q60EF6	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI00004503DF	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_015640038.1	InterPro:eIF3i	:	:	:	:

Description

EUKARYOTIC INITIATION FACTOR 3I, "eukaryotic translation initiation factor 3, subunit i"Similar to TGF-beta receptor-interacting protein 1. (Os05t0256000-01)

Coordinates

chr5:+:9448801..9454455

Molecular Weight (calculated)

36085.4 Da

IEP (calculated)

6.000

GRAVY (calculated)

-0.378

Length

326 amino acids

Sequence
(BLAST)

001: MRPILMKGHE RPLTFLRYNR DGDLLFSCAK DHTPNVWFAD NGDRLGTYSG HNGAVWSCDV SRDSTRLITG SADQTAKLWD VQTGAELFTF RFDAPARSVE
101: FAIGDGLAVI TTDNFMGNVP TAQVKRIADD PDDQSEESLL VISGIKGRIN RAVWGPLNRT IITAGEDATI RIWDTETGTC LNESDKEQGH QKTITSLSKS
201: ADWSHFLTGS LDKSAKLWDT RTLTLIKTYV TERPVNAVDI SPLLDHVVIG GGQDAMNVTM TDRRAGKFEA KFFHKILQEE IGGVKGHFGP INALAFNPDG
301: RSFSSGGEDG YVRLHHFDSD YFNIKI

Best Arabidopsis Sequence Match ( AT2G46290.1 )
(BLAST)

001: MTIECVNPEG LRFNQMKSSS HQTLETRMRP ILMKGHERPL TFLRYNRNGD LLFSCAKDHT PTVWFADNGE RLGTYRGHSG AVWCCDISRD SSRLITGSAD
101: QTAKLWDVKS GKELFTFKFG APARSVDFSV GDHLAVITTD HFVGTSSAIH VKRIAEDPED QVGDSVLVLQ SPDGKKKINR AVWGPLNQTI VSGGEDAAIR
201: IWDAETGKLL KQSDEEVGHK EAITSLCKAA DDSHFLTGSH DKTAKLWDMR TLTLIKTYTT VVPVNAVAMS PLLNHVVLGG GQDASAVTTT DHRAGKFEAK
301: FYDTILQEEI GGVKGHFGPI NALAFSPDGK SFSSGGEDGY VRLHHFDSNY FNIKI

Arabidopsis Description

Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/TrEMBL;Acc:A0A178VR74]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.