Factsheet for Solyc11g017070.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023872	Potato	cytosol, mitochondrion	97.24	97.24
KRH74580	Soybean	endoplasmic reticulum	87.42	87.42
VIT_01s0011g06630.t01	Wine grape	cytosol	87.12	87.12
KRH23773	Soybean	endoplasmic reticulum	86.81	86.81
KRH40031	Soybean	endoplasmic reticulum	86.5	86.5
GSMUA_Achr2P07570_001	Banana	cytosol	81.29	82.55
CDY34145	Canola	cytosol, mitochondrion	83.13	82.12
AT2G46280.2	Thale cress	mitochondrion	82.52	82.01
Bra025277.1-P	Field mustard	mitochondrion	83.44	79.07
CDY13713	Canola	mitochondrion	83.44	79.07
Os08t0308100-01	Rice	nucleus	78.22	78.22
Os05t0256000-01	Rice	nucleus, plasma membrane	78.22	78.22
CDY71621	Canola	mitochondrion	82.52	78.2
TraesCS4D01G149800.1	Wheat	plastid	77.61	77.61
TraesCS2B01G539500.1	Wheat	cytosol, mitochondrion	77.3	76.83
Zm00001d007900_P003	Maize	mitochondrion	76.07	76.07
Zm00001d018873_P001	Maize	plasma membrane	76.07	76.07
TraesCS2A01G511400.1	Wheat	cytosol, mitochondrion	75.77	76.0
EER98031	Sorghum	mitochondrion	75.77	75.77
Os11t0606300-01	Rice	cytosol	15.64	75.0
AT2G46290.1	Thale cress	cytosol	81.29	74.65
HORVU4Hr1G040280.4	Barley	cytosol, mitochondrion	77.3	74.34
TraesCS4A01G166500.1	Wheat	nucleus	77.3	74.34
TraesCS4B01G164300.1	Wheat	golgi	72.39	71.52
GSMUA_Achr11P...	Banana	cytosol	55.21	60.81
Bra033012.1-P	Field mustard	cytosol	83.13	42.54
CDY03970	Canola	cytosol	83.13	39.85
Solyc03g120010.2.1	Tomato	nucleus	25.77	23.6
Solyc06g052000.1.1	Tomato	cytosol	11.66	21.59

Protein Annotations

MapMan:17.4.1.3.9	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412
GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0033290	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:K4D6L1	HAMAP:MF_03008	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19877	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:Solyc11g017070.1	EnsemblPlants:Solyc11g017070.1.1	UniParc:UPI000276A757	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:eIF3i	:	:	:

Description

Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/TrEMBL;Acc:K4D6L1]

Coordinates

chr11:-:7857531..7863332

Molecular Weight (calculated)

35852.5 Da

IEP (calculated)

7.416

GRAVY (calculated)

-0.327

Length

326 amino acids

Sequence
(BLAST)

001: MRPILMKGHE RPLTFLKYNR DGDLLFSCAK DHTPTVWFAD NGERLGTYRG HNGAVWCCDV SRDSSRLITG SADQTAMLWD VQTGAQLHTF TFDSPARSVD
101: FSVGDKLAVI TTDPFMGLTS AIHIKNISKD PSEQMSESVL VLKGPQGRIN RAVWGPLNKT IISAGEDAVI RIWDAETGKV LKESDKEIGH KKGITSLQKS
201: VDGSHFITGS LDKSAKLWDI RSLTLIKNYT TERPVNAVTM SPLLNHVVLG GGQDASAVTT TDHRAGKFEA KFYDKILTEE IGGVKGHFGP INALAFNPDG
301: KSFASGGEDG YVRLHHFDQD YFNIRI

Best Arabidopsis Sequence Match ( AT2G46290.1 )
(BLAST)

001: MTIECVNPEG LRFNQMKSSS HQTLETRMRP ILMKGHERPL TFLRYNRNGD LLFSCAKDHT PTVWFADNGE RLGTYRGHSG AVWCCDISRD SSRLITGSAD
101: QTAKLWDVKS GKELFTFKFG APARSVDFSV GDHLAVITTD HFVGTSSAIH VKRIAEDPED QVGDSVLVLQ SPDGKKKINR AVWGPLNQTI VSGGEDAAIR
201: IWDAETGKLL KQSDEEVGHK EAITSLCKAA DDSHFLTGSH DKTAKLWDMR TLTLIKTYTT VVPVNAVAMS PLLNHVVLGG GQDASAVTTT DHRAGKFEAK
301: FYDTILQEEI GGVKGHFGPI NALAFSPDGK SFSSGGEDGY VRLHHFDSNY FNIKI

Arabidopsis Description

Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/TrEMBL;Acc:A0A178VR74]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.