Factsheet for GSMUA_Achr11P12980_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P07570_001	Banana	cytosol	67.57	62.31
KRH74580	Soybean	endoplasmic reticulum	62.16	56.44
VIT_01s0011g06630.t01	Wine grape	cytosol	61.49	55.83
PGSC0003DMT400023872	Potato	cytosol, mitochondrion	61.15	55.52
KRH23773	Soybean	endoplasmic reticulum	61.15	55.52
Solyc11g017070.1.1	Tomato	nucleus	60.81	55.21
KRH40031	Soybean	endoplasmic reticulum	60.47	54.91
Os11t0606300-01	Rice	cytosol	12.5	54.41
Os08t0308100-01	Rice	nucleus	58.78	53.37
Os05t0256000-01	Rice	nucleus, plasma membrane	58.11	52.76
Zm00001d007900_P003	Maize	mitochondrion	57.09	51.84
Zm00001d018873_P001	Maize	plasma membrane	56.76	51.53
TraesCS2B01G539500.1	Wheat	cytosol, mitochondrion	56.76	51.22
TraesCS4D01G149800.1	Wheat	plastid	56.08	50.92
EER98031	Sorghum	mitochondrion	55.74	50.61
TraesCS4B01G164300.1	Wheat	golgi	56.42	50.61
CDY34145	Canola	cytosol, mitochondrion	56.08	50.3
TraesCS2A01G511400.1	Wheat	cytosol, mitochondrion	55.07	50.15
CDY13713	Canola	mitochondrion	58.11	50.0
Bra025277.1-P	Field mustard	mitochondrion	58.11	50.0
AT2G46280.2	Thale cress	mitochondrion	54.73	49.39
HORVU4Hr1G040280.4	Barley	cytosol, mitochondrion	56.42	49.26
TraesCS4A01G166500.1	Wheat	nucleus	56.42	49.26
CDY71621	Canola	mitochondrion	57.09	49.13
AT2G46290.1	Thale cress	cytosol	54.05	45.07
Bra033012.1-P	Field mustard	cytosol	56.42	26.22
CDY03970	Canola	cytosol	56.42	24.56
GSMUA_Achr2P17000_001	Banana	cytosol	16.22	14.04
GSMUA_Achr6P00680_001	Banana	cytosol	15.54	13.26

Protein Annotations

MapMan:17.4.1.3.9	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr11G12980_001	EnsemblPlants:GSMUA_Achr11P12980_001	EnsemblPlants:GSMUA_Achr11T12980_001
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0RRS8	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19877	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002959B92
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:eIF3i
SEG:seg	:	:	:	:	:

Description

Putative Eukaryotic translation initiation factor 3 subunit I [Source:GMGC_GENE;Acc:GSMUA_Achr11G12980_001]

Coordinates

chr11:-:12712903..12720336

Molecular Weight (calculated)

32657.1 Da

IEP (calculated)

7.964

GRAVY (calculated)

-0.161

Length

296 amino acids

Sequence
(BLAST)

001: MLFVYFSRRE ICSSPVPRTD HTPTVWFADN GERLGTYRGH NGAVWCCDVS RDSMRLITGS ADQTVKLWNV QTGTQLFSFN FDCPAKSVDF SVADKLAVIT
101: IDPFMGLPST IQKIFRRKQR KKDQDLESVL TIKGPQGPIN RAVWGPLNKT IISAGEDAVI RVWDTETGQF LKESDKETGH QKTISSLSKS ADGSHFLTGS
201: LDKSAKNSDT CQNICDGACL LLVIVIKLCF HFLLEDTFYS CIASVFLTDL PKKKVVIGGG GVGAGQEAVH VTTTDHRAGK FEAKFFHKIL QEEIGA

Best Arabidopsis Sequence Match ( AT2G46280.1 )
(BLAST)

001: MRPILMKGHE RPLTFLRYNR EGDLLFSCAK DHTPTLWFAD NGERLGTYRG HNGAVWCCDV SRDSSRLITG SADQTAKLWD VKSGKELFTF KFNAPTRSVD
101: FAVGDRLAVI TTDHFVDRTA AIHVKRIAED PEEQDAESVL VLHCPDGKKR INRAVWGPLN QTIVSGGEDK VIRIWDAETG KLLKQSDEEV GHKKDITSLC
201: KAADDSHFLT GSLDKTAKLW DMRTLTLLKT YTTVVPVNAV SLSPLLNHVV LGGGQDASAV TTTDHRAGKF EAKFYDKILQ EEIGGVKGHF GPINALAFNP
301: DGKSFSSGGE DGYVRLHHFD SDYFNIKI

Arabidopsis Description

TIF3I1Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/Swiss-Prot;Acc:Q38884]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.