Factsheet for VIT_01s0011g06630.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74580	Soybean	endoplasmic reticulum	91.72	91.72
KRH23773	Soybean	endoplasmic reticulum	90.18	90.18
KRH40031	Soybean	endoplasmic reticulum	89.57	89.57
PGSC0003DMT400023872	Potato	cytosol, mitochondrion	88.34	88.34
GSMUA_Achr2P07570_001	Banana	cytosol	85.89	87.23
Solyc11g017070.1.1	Tomato	nucleus	87.12	87.12
CDY34145	Canola	cytosol, mitochondrion	82.21	81.21
Os08t0308100-01	Rice	nucleus	80.98	80.98
AT2G46280.2	Thale cress	mitochondrion	81.29	80.79
Zm00001d018873_P001	Maize	plasma membrane	80.37	80.37
TraesCS4D01G149800.1	Wheat	plastid	80.37	80.37
Os05t0256000-01	Rice	nucleus, plasma membrane	80.37	80.37
EER98031	Sorghum	mitochondrion	80.06	80.06
Zm00001d007900_P003	Maize	mitochondrion	80.06	80.06
TraesCS2B01G539500.1	Wheat	cytosol, mitochondrion	80.37	79.88
CDY13713	Canola	mitochondrion	83.13	78.78
Bra025277.1-P	Field mustard	mitochondrion	82.82	78.49
TraesCS2A01G511400.1	Wheat	cytosol, mitochondrion	77.91	78.15
CDY71621	Canola	mitochondrion	82.21	77.91
HORVU4Hr1G040280.4	Barley	cytosol, mitochondrion	80.37	77.29
TraesCS4A01G166500.1	Wheat	nucleus	80.37	77.29
Os11t0606300-01	Rice	cytosol	15.95	76.47
TraesCS4B01G164300.1	Wheat	golgi	74.85	73.94
AT2G46290.1	Thale cress	cytosol	80.06	73.52
GSMUA_Achr11P...	Banana	cytosol	55.83	61.49
Bra033012.1-P	Field mustard	cytosol	82.21	42.07
CDY03970	Canola	cytosol	82.21	39.41
VIT_09s0002g05790.t01	Wine grape	cytosol	24.85	23.41
VIT_11s0016g04710.t01	Wine grape	cytosol	23.62	22.13

Protein Annotations

EntrezGene:100250769	wikigene:100250769	MapMan:17.4.1.3.9	Gene3D:2.130.10.10	UniProt:A5AL04	EMBL:AM429166
ProteinID:CAN80198	ProteinID:CAN80198.1	ProteinID:CBI26753	ProteinID:CBI26753.3	EMBL:FN595752	InterPro:G-protein_beta_WD-40_rep
GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282
GO:GO:0019538	GO:GO:0033290	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100250769
wikigene:LOC100250769	HAMAP:MF_03008	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19877	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC54457	UniParc:UPI0001523ABD
ArrayExpress:VIT_01s0011g06630	EnsemblPlantsGene:VIT_01s0011g06630	EnsemblPlants:VIT_01s0011g06630.t01	unigene:Vvi.282	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002285281	RefSeq:XP_002285281.1	InterPro:eIF3i

Description

Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/TrEMBL;Acc:A5AL04]

Coordinates

chr1:+:6459163..6466636

Molecular Weight (calculated)

36022.6 Da

IEP (calculated)

7.825

GRAVY (calculated)

-0.373

Length

326 amino acids

Sequence
(BLAST)

001: MRPILMKGHE RPLTFLKYNR DGDLLFSCAK DHTPTVWFAD NGERLGTYRG HNGAVWTCDV SRDSMRLITG SADQTVKLWN VETGAQLFTF NFDSPARSVD
101: FSVGDKLAVI TTDPFMELTS AIHVKRIARD PSQQTAESAL VIKGPQGRIN RAIWGPLNRT IISAGEDAIV RIWDSETGKL LKESDKETGH KKTVTSLSKA
201: VDGSHFVTGS LDKSAKLWDS RTLTLIKTYL TERPVNAVTM SPLLDHVVLG GGQDASHVTT TDHRAGKFEA KFYDKILQEE IGGVKGHFGP INALAFNPDG
301: KSFSSGGEDG YVRLHHFDPD YFNVKI

Best Arabidopsis Sequence Match ( AT2G46280.1 )
(BLAST)

001: MRPILMKGHE RPLTFLRYNR EGDLLFSCAK DHTPTLWFAD NGERLGTYRG HNGAVWCCDV SRDSSRLITG SADQTAKLWD VKSGKELFTF KFNAPTRSVD
101: FAVGDRLAVI TTDHFVDRTA AIHVKRIAED PEEQDAESVL VLHCPDGKKR INRAVWGPLN QTIVSGGEDK VIRIWDAETG KLLKQSDEEV GHKKDITSLC
201: KAADDSHFLT GSLDKTAKLW DMRTLTLLKT YTTVVPVNAV SLSPLLNHVV LGGGQDASAV TTTDHRAGKF EAKFYDKILQ EEIGGVKGHF GPINALAFNP
301: DGKSFSSGGE DGYVRLHHFD SDYFNIKI

Arabidopsis Description

TIF3I1Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/Swiss-Prot;Acc:Q38884]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.