Factsheet for TraesCS4D01G149800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22736107

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G040280.4	Barley	cytosol, mitochondrion	99.69	95.87
TraesCS4A01G166500.1	Wheat	nucleus	99.39	95.58
TraesCS4B01G164300.1	Wheat	golgi	93.25	92.12
Os08t0308100-01	Rice	nucleus	89.57	89.57
Os05t0256000-01	Rice	nucleus, plasma membrane	89.26	89.26
Zm00001d018873_P001	Maize	plasma membrane	88.96	88.96
Zm00001d007900_P003	Maize	mitochondrion	88.96	88.96
EER98031	Sorghum	mitochondrion	88.65	88.65
KRH74580	Soybean	endoplasmic reticulum	81.29	81.29
GSMUA_Achr2P07570_001	Banana	cytosol	79.14	80.37
KRH40031	Soybean	endoplasmic reticulum	80.37	80.37
VIT_01s0011g06630.t01	Wine grape	cytosol	80.37	80.37
KRH23773	Soybean	endoplasmic reticulum	79.75	79.75
PGSC0003DMT400023872	Potato	cytosol, mitochondrion	79.45	79.45
Solyc11g017070.1.1	Tomato	nucleus	77.61	77.61
AT2G46280.2	Thale cress	mitochondrion	77.3	76.83
CDY34145	Canola	cytosol, mitochondrion	76.07	75.15
CDY13713	Canola	mitochondrion	77.3	73.26
Bra025277.1-P	Field mustard	mitochondrion	77.3	73.26
CDY71621	Canola	mitochondrion	76.69	72.67
AT2G46290.1	Thale cress	cytosol	76.38	70.14
GSMUA_Achr11P...	Banana	cytosol	50.92	56.08
Bra033012.1-P	Field mustard	cytosol	76.07	38.93
CDY03970	Canola	cytosol	76.07	36.47
TraesCS5D01G201800.1	Wheat	cytosol	23.62	22.65
TraesCS7D01G350400.1	Wheat	cytosol	23.01	21.8

Protein Annotations

MapMan:17.4.1.3.9	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
HAMAP:MF_03008	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19877	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS4D01G149800	EnsemblPlants:TraesCS4D01G149800.1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	InterPro:eIF3i

Description

No Description!

Coordinates

chr4D:-:161258617..161264311

Molecular Weight (calculated)

36198.8 Da

IEP (calculated)

6.969

GRAVY (calculated)

-0.393

Length

326 amino acids

Sequence
(BLAST)

001: MRPILMKGHE RPLTFLKYNR DGDLLFSCAK DHTPTVWYAD NGDRLGTYRG HNGAVWSCDV SRHSTRLITG SADQTAKLWD VKTGKELFTF RFDAPARSVD
101: LAIGDHLAVI TTDSFMGNMP TAQVKRIAED LQEQTEESAL VISGITGRIN RAVWGPGNRT IITAGEDATI RIWDSETGKL LKESDKEVGH QKAISSLSKS
201: LDWSHFLTGS LDKSAKLWDA RTLTLIKTYV TERPVNAVDI SPTLDHVVIG GGQDAMNVTM TDRRAGKFEA KFFHKILEEE IGGVKGHFGP INALAFNPDG
301: RSFSSGGEDG YVRLHHFDPE YFNIKM

Best Arabidopsis Sequence Match ( AT2G46290.1 )
(BLAST)

001: MTIECVNPEG LRFNQMKSSS HQTLETRMRP ILMKGHERPL TFLRYNRNGD LLFSCAKDHT PTVWFADNGE RLGTYRGHSG AVWCCDISRD SSRLITGSAD
101: QTAKLWDVKS GKELFTFKFG APARSVDFSV GDHLAVITTD HFVGTSSAIH VKRIAEDPED QVGDSVLVLQ SPDGKKKINR AVWGPLNQTI VSGGEDAAIR
201: IWDAETGKLL KQSDEEVGHK EAITSLCKAA DDSHFLTGSH DKTAKLWDMR TLTLIKTYTT VVPVNAVAMS PLLNHVVLGG GQDASAVTTT DHRAGKFEAK
301: FYDTILQEEI GGVKGHFGPI NALAFSPDGK SFSSGGEDGY VRLHHFDSNY FNIKI

Arabidopsis Description

Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/TrEMBL;Acc:A0A178VR74]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.