CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40031	Soybean	endoplasmic reticulum	96.32	96.32
KRH74580	Soybean	endoplasmic reticulum	94.79	94.79
VIT_01s0011g06630.t01	Wine grape	cytosol	90.18	90.18
PGSC0003DMT400023872	Potato	cytosol, mitochondrion	88.04	88.04
GSMUA_Achr2P07570_001	Banana	cytosol	85.58	86.92
Solyc11g017070.1.1	Tomato	nucleus	86.81	86.81
Os08t0308100-01	Rice	nucleus	81.9	81.9
Os05t0256000-01	Rice	nucleus, plasma membrane	81.29	81.29
CDY34145	Canola	cytosol, mitochondrion	82.21	81.21
AT2G46280.2	Thale cress	mitochondrion	81.29	80.79
TraesCS4D01G149800.1	Wheat	plastid	79.75	79.75
CDY13713	Canola	mitochondrion	84.05	79.65
Bra025277.1-P	Field mustard	mitochondrion	83.74	79.36
TraesCS2B01G539500.1	Wheat	cytosol, mitochondrion	79.75	79.27
CDY71621	Canola	mitochondrion	83.44	79.07
Zm00001d007900_P003	Maize	mitochondrion	78.53	78.53
Zm00001d018873_P001	Maize	plasma membrane	78.53	78.53
EER98031	Sorghum	mitochondrion	78.22	78.22
Os11t0606300-01	Rice	cytosol	16.26	77.94
TraesCS2A01G511400.1	Wheat	cytosol, mitochondrion	77.61	77.85
TraesCS4A01G166500.1	Wheat	nucleus	80.06	76.99
HORVU4Hr1G040280.4	Barley	cytosol, mitochondrion	79.75	76.7
AT2G46290.1	Thale cress	cytosol	80.67	74.08
TraesCS4B01G164300.1	Wheat	golgi	73.93	73.03
GSMUA_Achr11P...	Banana	cytosol	55.52	61.15
Bra033012.1-P	Field mustard	cytosol	82.21	42.07
CDY03970	Canola	cytosol	82.21	39.41
KRH56652	Soybean	cytosol, endoplasmic reticulum, nucleus	24.54	22.73
KRH03754	Soybean	cytosol	24.54	22.73

Protein Annotations

EntrezGene:100819486	MapMan:17.4.1.3.9	Gene3D:2.130.10.10	EMBL:ACUP02007160	EMBL:BT098417	UniProt:C6TL41
InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_12G002900	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413
GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0033290	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:KRH23773	ProteinID:KRH23773	ProteinID:KRH23773.1	HAMAP:MF_03008	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19877	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0001B16F78	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	InterPro:eIF3i	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:246725..249298

Molecular Weight (calculated)

35906.4 Da

IEP (calculated)

6.746

GRAVY (calculated)

-0.355

Length

326 amino acids

Sequence
(BLAST)

001: MRPILMKGHE RPLTFLKYNR DGDLLFSCAK DHNPTVWFAD NGERLGTYRG HNGAVWTCDV SRDSARLITG SADQTAKLWD VQSGLQLYTF NFDSPARSVD
101: FSVGDKLAVI TTDPFMELPS AIHVKRIAND PSQQIGESVL LIKGPQGRIN RAIWGPLNTT IISAGEDAVI RIWDSETGKL LQESDKESGH KKTVTSLAKS
201: ADDSHFLTGS LDKSARLWDT RSLTLIKTYV TERPVNAVTM SPLLDHVVIG GGQDASAVTT TDHRAGKFEA KFFDKILQEE IGGVKGHFGP INALAFNPDG
301: KSFSSGGEDG YVRLHHFDPD YFNIKI

Best Arabidopsis Sequence Match ( AT2G46290.1 )
(BLAST)

001: MTIECVNPEG LRFNQMKSSS HQTLETRMRP ILMKGHERPL TFLRYNRNGD LLFSCAKDHT PTVWFADNGE RLGTYRGHSG AVWCCDISRD SSRLITGSAD
101: QTAKLWDVKS GKELFTFKFG APARSVDFSV GDHLAVITTD HFVGTSSAIH VKRIAEDPED QVGDSVLVLQ SPDGKKKINR AVWGPLNQTI VSGGEDAAIR
201: IWDAETGKLL KQSDEEVGHK EAITSLCKAA DDSHFLTGSH DKTAKLWDMR TLTLIKTYTT VVPVNAVAMS PLLNHVVLGG GQDASAVTTT DHRAGKFEAK
301: FYDTILQEEI GGVKGHFGPI NALAFSPDGK SFSSGGEDGY VRLHHFDSNY FNIKI

Arabidopsis Description

Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/TrEMBL;Acc:A0A178VR74]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.