Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34145 | Canola | cytosol, mitochondrion | 87.2 | 86.67 |
| PGSC0003DMT400023872 | Potato | cytosol, mitochondrion | 83.84 | 84.36 |
| AT2G46290.1 | Thale cress | cytosol | 90.85 | 83.94 |
| Bra025277.1-P | Field mustard | mitochondrion | 87.5 | 83.43 |
| CDY13713 | Canola | mitochondrion | 87.5 | 83.43 |
| CDY71621 | Canola | mitochondrion | 86.89 | 82.85 |
| KRH74580 | Soybean | endoplasmic reticulum | 82.32 | 82.82 |
| Solyc11g017070.1.1 | Tomato | nucleus | 82.01 | 82.52 |
| KRH40031 | Soybean | endoplasmic reticulum | 81.1 | 81.6 |
| VIT_01s0011g06630.t01 | Wine grape | cytosol | 80.79 | 81.29 |
| KRH23773 | Soybean | endoplasmic reticulum | 80.79 | 81.29 |
| Os08t0308100-01 | Rice | nucleus | 77.74 | 78.22 |
| TraesCS4D01G149800.1 | Wheat | plastid | 76.83 | 77.3 |
| Os05t0256000-01 | Rice | nucleus, plasma membrane | 76.83 | 77.3 |
| GSMUA_Achr2P07570_001 | Banana | cytosol | 75.0 | 76.64 |
| Zm00001d007900_P003 | Maize | mitochondrion | 75.91 | 76.38 |
| Zm00001d018873_P001 | Maize | plasma membrane | 75.91 | 76.38 |
| EER98031 | Sorghum | mitochondrion | 75.61 | 76.07 |
| TraesCS2B01G539500.1 | Wheat | cytosol, mitochondrion | 75.3 | 75.3 |
| Os11t0606300-01 | Rice | cytosol | 15.55 | 75.0 |
| HORVU4Hr1G040280.4 | Barley | cytosol, mitochondrion | 76.52 | 74.04 |
| TraesCS4A01G166500.1 | Wheat | nucleus | 76.52 | 74.04 |
| TraesCS2A01G511400.1 | Wheat | cytosol, mitochondrion | 73.17 | 73.85 |
| TraesCS4B01G164300.1 | Wheat | golgi | 71.34 | 70.91 |
| GSMUA_Achr11P... | Banana | cytosol | 49.39 | 54.73 |
| Bra033012.1-P | Field mustard | cytosol | 87.2 | 44.9 |
| CDY03970 | Canola | cytosol | 87.2 | 42.06 |
| AT1G15470.1 | Thale cress | cytosol | 23.48 | 23.12 |
| AT3G15610.1 | Thale cress | cytosol | 23.78 | 22.87 |
| AT1G52730.1 | Thale cress | cytosol | 23.78 | 22.74 |
Protein Annotations
| MapMan:17.4.1.3.9 | Gene3D:2.130.10.10 | EntrezGene:819236 | UniProt:A0A178VXD1 | ProteinID:AAC62878.1 | ProteinID:AEC10670.1 |
| ProteinID:AEC10671.1 | EMBL:AF285835 | EMBL:AF370485 | EMBL:AK226590 | ArrayExpress:AT2G46280 | EnsemblPlantsGene:AT2G46280 |
| RefSeq:AT2G46280 | TAIR:AT2G46280 | RefSeq:AT2G46280-TAIR-G | EnsemblPlants:AT2G46280.2 | TAIR:AT2G46280.2 | EMBL:AY064633 |
| Unigene:At.21646 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0001731 | GO:GO:0001732 | GO:GO:0002183 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005852 | GO:GO:0006412 |
| GO:GO:0006413 | GO:GO:0006446 | GO:GO:0006950 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016282 |
| GO:GO:0019538 | GO:GO:0033290 | GO:GO:0046686 | GO:GO:0080008 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | HAMAP:MF_03008 | RefSeq:NP_182151.1 | RefSeq:NP_850450.1 | ProteinID:OAP11007.1 | PFAM:PF00400 |
| PO:PO:0000005 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0009005 | PO:PO:0025195 |
| PO:PO:0025281 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19877 |
| UniProt:Q0WVZ3 | UniProt:Q38884 | SMART:SM00320 | SUPFAM:SSF50978 | Symbol:TRIP-1 | EMBL:U36765 |
| UniParc:UPI000012D2FA | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| InterPro:eIF3i | SEG:seg | : | : | : | : |
Description
TIF3I1Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/Swiss-Prot;Acc:Q38884]
Coordinates
chr2:-:19003158..19005732
Molecular Weight (calculated)
36390.0 Da
IEP (calculated)
6.997
GRAVY (calculated)
-0.377
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPILMKGHE RPLTFLRYNR EGDLLFSCAK DHTPTLWFAD NGERLGTYRG HNGAVWCCDV SRDSSRLITG SADQTAKLWD VKSGKELFTF KFNAPTRSVD
101: FAVGDRLAVI TTDHFVDRTA AIHVKRIAED PEEQDAESVL VLHCPDGKKR INRAVWGPLN QTIVSGGEDK VIRIWDAETG KLLKQSDEEV GHKKDITSLC
201: KAADDSHFLT GSLDKTAKLW DMRTLTLLKT YTTVVPVNAV SLSPLLNHVV LGGGQDASAV TTTDHRAGKF EAKFYDKILQ EEIGGVKGHF GPINALAFNP
301: DGKSFSSGGE DGYVRLHHFD SDYFNIKI
101: FAVGDRLAVI TTDHFVDRTA AIHVKRIAED PEEQDAESVL VLHCPDGKKR INRAVWGPLN QTIVSGGEDK VIRIWDAETG KLLKQSDEEV GHKKDITSLC
201: KAADDSHFLT GSLDKTAKLW DMRTLTLLKT YTTVVPVNAV SLSPLLNHVV LGGGQDASAV TTTDHRAGKF EAKFYDKILQ EEIGGVKGHF GPINALAFNP
301: DGKSFSSGGE DGYVRLHHFD SDYFNIKI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.