Factsheet for TraesCS4B01G164300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G149800.1	Wheat	plastid	92.12	93.25
HORVU4Hr1G040280.4	Barley	cytosol, mitochondrion	92.42	89.97
TraesCS4A01G166500.1	Wheat	nucleus	92.12	89.68
TraesCS2B01G539500.1	Wheat	cytosol, mitochondrion	88.18	88.72
Os08t0308100-01	Rice	nucleus	84.24	85.28
Os05t0256000-01	Rice	nucleus, plasma membrane	83.94	84.97
Zm00001d018873_P001	Maize	plasma membrane	83.64	84.66
Zm00001d007900_P003	Maize	mitochondrion	83.64	84.66
EER98031	Sorghum	mitochondrion	83.03	84.05
KRH74580	Soybean	endoplasmic reticulum	74.24	75.15
VIT_01s0011g06630.t01	Wine grape	cytosol	73.94	74.85
GSMUA_Achr2P07570_001	Banana	cytosol	72.42	74.45
KRH40031	Soybean	endoplasmic reticulum	73.33	74.23
KRH23773	Soybean	endoplasmic reticulum	73.03	73.93
PGSC0003DMT400023872	Potato	cytosol, mitochondrion	72.73	73.62
Solyc11g017070.1.1	Tomato	nucleus	71.52	72.39
AT2G46280.2	Thale cress	mitochondrion	70.91	71.34
CDY34145	Canola	cytosol, mitochondrion	70.61	70.61
CDY13713	Canola	mitochondrion	71.52	68.6
Bra025277.1-P	Field mustard	mitochondrion	71.52	68.6
CDY71621	Canola	mitochondrion	70.91	68.02
AT2G46290.1	Thale cress	cytosol	70.61	65.63
GSMUA_Achr11P...	Banana	cytosol	50.61	56.42
Bra033012.1-P	Field mustard	cytosol	70.61	36.58
CDY03970	Canola	cytosol	70.61	34.26
TraesCS5B01G194400.1	Wheat	cytosol, golgi	21.21	20.59
TraesCS7B01G254800.1	Wheat	cytosol	20.61	19.65

Protein Annotations

MapMan:17.4.1.3.9	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
HAMAP:MF_03008	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19877	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS4B01G164300	EnsemblPlants:TraesCS4B01G164300.1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	InterPro:eIF3i

Description

No Description!

Coordinates

chr4B:+:340638160..340641271

Molecular Weight (calculated)

36718.7 Da

IEP (calculated)

8.248

GRAVY (calculated)

-0.360

Length

330 amino acids

Sequence
(BLAST)

001: MRPILMKGHE RPLTFLKYNR DGDLLFSCAK DHTPTVWYAD NGDRLGTYRG HNGAVWSCDV SRHSTRLITG SADQTAKLWD VKTGKELFTF RFDAPARSVD
101: LAIGDHLAVI TTDSFMGNMP TAQVKRIAED LQDQTEESAL VISGITGRIN RAVWGPGNRT IITAGEDATI RIWDSETGKL LKESDKEVGH QKAISSLSKS
201: LDWSHFLTGS LDKSAKLWDA RTLTLIKTYV TERPVNAVDI SPTLDHVVIG GGQDAMNVTM TDRRAGKFEA KFFHKILEEE IGGVKGHFGP INALAFNPDG
301: RSSVIRANYI GNIRYTDHIL MKSLYESYMK

Best Arabidopsis Sequence Match ( AT2G46280.3 )
(BLAST)

001: MRPILMKGHE RPLTFLRYNR EGDLLFSCAK DHTPTLWFAD NGERLGTYRG HNGAVWCCDV SRDSSRLITG SADQTAKLWD VKSGKELFTF KFNAPTRSVD
101: FAVGDRLAVI TTDHFVDRTA AIHVKRIAED PEEQDAESVL VLHCPDGKKR INRAVWGPLN QTIVSGGEDK VIRIWDAETG KLLKQSDEEV GHKKDITSLC
201: KAADDSHFLT GSLDKTAKLW DMRTLTLLKT YTTVVPVNAV SLSPLLNHVC TNAS

Arabidopsis Description

TIF3I1Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/Swiss-Prot;Acc:Q38884]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.