Factsheet for Bra025277.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13713	Canola	mitochondrion	99.71	99.71
AT2G46280.2	Thale cress	mitochondrion	83.43	87.5
PGSC0003DMT400023872	Potato	cytosol, mitochondrion	80.81	85.28
KRH74580	Soybean	endoplasmic reticulum	79.94	84.36
KRH23773	Soybean	endoplasmic reticulum	79.36	83.74
Solyc11g017070.1.1	Tomato	nucleus	79.07	83.44
KRH40031	Soybean	endoplasmic reticulum	79.07	83.44
VIT_01s0011g06630.t01	Wine grape	cytosol	78.49	82.82
GSMUA_Achr2P07570_001	Banana	cytosol	74.42	79.75
AT2G46290.1	Thale cress	cytosol	81.69	79.15
Os08t0308100-01	Rice	nucleus	74.42	78.53
Os05t0256000-01	Rice	nucleus, plasma membrane	74.13	78.22
TraesCS4D01G149800.1	Wheat	plastid	73.26	77.3
Zm00001d018873_P001	Maize	plasma membrane	72.97	76.99
Zm00001d007900_P003	Maize	mitochondrion	72.67	76.69
EER98031	Sorghum	mitochondrion	72.38	76.38
TraesCS2B01G539500.1	Wheat	cytosol, mitochondrion	72.38	75.91
Os11t0606300-01	Rice	cytosol	14.83	75.0
HORVU4Hr1G040280.4	Barley	cytosol, mitochondrion	73.55	74.63
TraesCS4A01G166500.1	Wheat	nucleus	73.55	74.63
TraesCS2A01G511400.1	Wheat	cytosol, mitochondrion	69.48	73.54
TraesCS4B01G164300.1	Wheat	golgi	68.6	71.52
GSMUA_Achr11P...	Banana	cytosol	50.0	58.11
Bra033012.1-P	Field mustard	cytosol	88.66	47.88
Bra030366.1-P	Field mustard	cytosol	23.84	24.85
Bra018983.1-P	Field mustard	cytosol	23.26	23.74
Bra026760.1-P	Field mustard	cytosol	22.67	23.21

Protein Annotations

MapMan:17.4.1.3.9	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra025277	EnsemblPlants:Bra025277.1	EnsemblPlants:Bra025277.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282
GO:GO:0019538	GO:GO:0033290	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4E921
HAMAP:MF_03008	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19877	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000253F5A1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:eIF3i	:	:

Description

AT2G46280 (E=2e-110) TRIP-1, TIF3I1 | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1); nucleotide binding / protein binding

Coordinates

chrA06:+:22443905..22446076

Molecular Weight (calculated)

38094.0 Da

IEP (calculated)

6.841

GRAVY (calculated)

-0.348

Length

344 amino acids

Sequence
(BLAST)

001: MRPILMKGHE RPLTFLRYNR DGDMLFSCAK DHTPTLWYAD NGERHGTYRG HNGAVWCCDV SRDSSRLITG SADQTAKLWD VKTGTQLFSF KFSSPARSVD
101: FSVGDKLAVI TTDPFMARTS AIHVKRIADD PQDQDGESVL VLENPEGRKR INRAVWGPLN QTIVSGGEDA VLRIWDAETG KLLKETDKEV GHKQTITSLC
201: KSADDSHFLT GSLDKTAKAC LPFLLYLLFH NPPVLWDMRT LTLIKTYTSG VPVNAVSMSP LLDHVVIGGG QDASAVTTTD HRAGNFEAKF YDKILQEEIG
301: GVKGHFGPIN ALAFNPDGRS FSSGGEDGYV RLHHFDSDYF NIKI

Best Arabidopsis Sequence Match ( AT2G46290.1 )
(BLAST)

001: MTIECVNPEG LRFNQMKSSS HQTLETRMRP ILMKGHERPL TFLRYNRNGD LLFSCAKDHT PTVWFADNGE RLGTYRGHSG AVWCCDISRD SSRLITGSAD
101: QTAKLWDVKS GKELFTFKFG APARSVDFSV GDHLAVITTD HFVGTSSAIH VKRIAEDPED QVGDSVLVLQ SPDGKKKINR AVWGPLNQTI VSGGEDAAIR
201: IWDAETGKLL KQSDEEVGHK EAITSLCKAA DDSHFLTGSH DKTAKLWDMR TLTLIKTYTT VVPVNAVAMS PLLNHVVLGG GQDASAVTTT DHRAGKFEAK
301: FYDTILQEEI GGVKGHFGPI NALAFSPDGK SFSSGGEDGY VRLHHFDSNY FNIKI

Arabidopsis Description

Eukaryotic translation initiation factor 3 subunit I [Source:UniProtKB/TrEMBL;Acc:A0A178VR74]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.