Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G52730.1 | Thale cress | cytosol | 91.5 | 90.96 |
| GSMUA_Achr6P00680_001 | Banana | cytosol | 82.11 | 80.69 |
| EES04724 | Sorghum | cytosol | 80.65 | 80.65 |
| Zm00001d046445_P002 | Maize | cytosol, extracellular | 80.06 | 80.29 |
| TraesCS5D01G201800.1 | Wheat | cytosol | 80.06 | 80.29 |
| TraesCS5B01G194400.1 | Wheat | cytosol, golgi | 80.06 | 80.29 |
| HORVU5Hr1G058430.1 | Barley | cytosol | 80.06 | 80.29 |
| KRH56652 | Soybean | cytosol, endoplasmic reticulum, nucleus | 82.7 | 80.11 |
| EER90002 | Sorghum | cytosol | 79.77 | 80.0 |
| KRH03754 | Soybean | cytosol | 82.11 | 79.55 |
| GSMUA_Achr2P17000_001 | Banana | cytosol | 79.47 | 79.24 |
| Os06t0598900-01 | Rice | cytosol | 79.18 | 78.95 |
| TraesCS5A01G189200.2 | Wheat | cytosol | 80.06 | 78.9 |
| TraesCS7A01G372500.2 | Wheat | cytosol | 78.59 | 78.36 |
| HORVU7Hr1G084630.1 | Barley | cytosol | 78.3 | 78.07 |
| TraesCS7D01G350400.1 | Wheat | cytosol | 78.59 | 77.91 |
| Os02t0205400-01 | Rice | cytosol | 77.42 | 77.19 |
| TraesCS7B01G254800.1 | Wheat | cytosol | 78.3 | 77.17 |
| AT1G15470.1 | Thale cress | cytosol | 73.9 | 75.68 |
| PGSC0003DMT400014299 | Potato | cytosol | 77.42 | 74.16 |
| Solyc03g120010.2.1 | Tomato | nucleus | 76.83 | 73.6 |
| Zm00001d036905_P002 | Maize | cytosol | 79.47 | 71.13 |
| HORVU5Hr1G035620.1 | Barley | cytosol | 24.63 | 69.42 |
| HORVU7Hr1G085770.1 | Barley | cytosol | 22.58 | 63.11 |
| HORVU1Hr1G058470.4 | Barley | cytosol, nucleus, plastid | 38.42 | 46.95 |
| AT2G46280.2 | Thale cress | mitochondrion | 22.87 | 23.78 |
| AT2G46290.1 | Thale cress | cytosol | 21.99 | 21.13 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EntrezGene:820803 | UniProt:A0A178VBL8 | ProteinID:AEE75702.1 | ArrayExpress:AT3G15610 |
| EnsemblPlantsGene:AT3G15610 | RefSeq:AT3G15610 | TAIR:AT3G15610 | RefSeq:AT3G15610-TAIR-G | EnsemblPlants:AT3G15610.1 | TAIR:AT3G15610.1 |
| Unigene:At.43109 | ProteinID:BAB02292.1 | EMBL:BT002047 | EMBL:BT003420 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0008150 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_566519.1 | ProteinID:OAP03088.1 |
| PFAM:PF00400 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR44239 | PANTHER:PTHR44239:SF1 | UniProt:Q9LW17 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000000C009 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : |
Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9LW17]
Coordinates
chr3:-:5290847..5293241
Molecular Weight (calculated)
37357.8 Da
IEP (calculated)
6.446
GRAVY (calculated)
-0.414
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKKVATPL VCHGHSRPVV DLFYSPITPD GFFLISASKD SQPMLRNGET GDWIGTFEGH KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE
101: HKHIVRACAF SQDTKYLITG GFEKILRVFD LNRLDAPPTE IDKSPGSIRT LTWLHGDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG NKFVAGGEDM WVRLFDFHTG KEIGCNKGHH GPVHCVRFAP TGESYASGSE DGTIRIWQTG
301: PVNPEEISES KPKQSVDEVA RKIEGFHINK EGKTAEKPSD A
101: HKHIVRACAF SQDTKYLITG GFEKILRVFD LNRLDAPPTE IDKSPGSIRT LTWLHGDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG NKFVAGGEDM WVRLFDFHTG KEIGCNKGHH GPVHCVRFAP TGESYASGSE DGTIRIWQTG
301: PVNPEEISES KPKQSVDEVA RKIEGFHINK EGKTAEKPSD A
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.