CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90002	Sorghum	cytosol	85.34	85.59
Os02t0205400-01	Rice	cytosol	84.75	84.5
Bra030366.1-P	Field mustard	cytosol	80.65	83.33
CDY62165	Canola	cytosol	80.35	83.03
Bra018983.1-P	Field mustard	cytosol	81.82	82.79
CDY62196	Canola	cytosol	81.82	82.79
CDY61819	Canola	cytosol	79.77	82.42
GSMUA_Achr6P00680_001	Banana	cytosol	83.87	82.42
GSMUA_Achr2P17000_001	Banana	cytosol	82.11	81.87
CDX89958	Canola	cytosol	81.52	81.52
AT3G15610.1	Thale cress	cytosol	80.65	80.65
CDY40132	Canola	cytosol	80.65	80.65
AT1G52730.1	Thale cress	cytosol	80.35	79.88
VIT_11s0016g04710.t01	Wine grape	cytosol	81.23	79.6
VIT_09s0002g05790.t01	Wine grape	cytosol	80.65	79.48
KRH56652	Soybean	cytosol, endoplasmic reticulum, nucleus	80.65	78.12
KRH03754	Soybean	cytosol	79.47	76.99
AT1G15470.1	Thale cress	cytosol	72.73	74.47
PGSC0003DMT400014299	Potato	cytosol	77.13	73.88
CDY39650	Canola	cytosol	72.14	73.43
CDY55992	Canola	cytosol	70.38	71.43
CDX81717	Canola	cytosol	70.38	71.43
Bra026760.1-P	Field mustard	cytosol	69.79	70.83
Solyc06g052000.1.1	Tomato	cytosol	26.69	51.7
EER98031	Sorghum	mitochondrion	21.41	22.39

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:8082936	UniProt:C5XXY1	EnsemblPlants:EES04724	ProteinID:EES04724
ProteinID:EES04724.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR44239	PANTHER:PTHR44239:SF1	SMART:SM00320	EnsemblPlantsGene:SORBI_3004G086700	SUPFAM:SSF50978
unigene:Sbi.1466	UniParc:UPI0001A857CE	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_002451748.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:7289497..7299263

Molecular Weight (calculated)

37027.3 Da

IEP (calculated)

6.184

GRAVY (calculated)

-0.318

Length

341 amino acids

Sequence
(BLAST)

001: MDKKKVAVPT VCHGHSRPVV DLFYSPVTPD GYFLISASKD SNPMLRNGET GDWIGTFQGH KGAVWSACLD TNALRAASGS ADFSAKIWDA LTGDVLHSFE
101: HKHIVRACAF SEDTHMLLTG GFEKILRIYD LNRPDATPRE IDKSPGSVRT VTWLHSDQTI LSSCADLGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: FITTTDGSSV KFWDANHFGL VKSYNMPCAV ESASLEPNCG NKFVTGGEDM WVRVFDFFTG EELACNKGHH GPVHCVRFTP VGESYASGSE DGTIRIWQLG
301: PANSDEQEAA SANGKAKVGV NDVARKIEGF HISKDGQVEG T

Best Arabidopsis Sequence Match ( AT1G52730.1 )
(BLAST)

001: MEKKKVTIPQ VCHGHSRPVV DLFYSPITPD GFFLISASKD SHPMLRNGET GDWIGTFEGH KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE
101: HKHIVRACAF SEDTKSLLTG GFEKILRVFD MNRLDAPPTE VDKSPGSIRT LTWLHSDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG EKFVAGGEDM WVRVFDFYTG EEIGCNKGHH GPVHCVRFTP TGLSYASGSE DGTIRIWQTT
301: PANPEENETS SRRVKHSVDE VSKKIEGFHI NKEGKTAEKP SDT

Arabidopsis Description

AT1G52730 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.