CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55992	Canola	cytosol	98.21	98.21
CDY39650	Canola	cytosol	92.26	92.54
AT1G15470.1	Thale cress	cytosol	91.67	92.49
VIT_09s0002g05790.t01	Wine grape	cytosol	76.49	74.28
CDY61819	Canola	cytosol	72.92	74.24
CDY62165	Canola	cytosol	72.92	74.24
CDY62196	Canola	cytosol	73.81	73.59
TraesCS7A01G372500.2	Wheat	cytosol	74.4	73.1
HORVU5Hr1G058430.1	Barley	cytosol	73.81	72.94
TraesCS5B01G194400.1	Wheat	cytosol, golgi	73.81	72.94
TraesCS5D01G201800.1	Wheat	cytosol	73.81	72.94
GSMUA_Achr2P17000_001	Banana	cytosol	74.11	72.81
Os02t0205400-01	Rice	cytosol	74.11	72.81
CDY40132	Canola	cytosol	73.81	72.73
CDX89958	Canola	cytosol	73.81	72.73
TraesCS7D01G350400.1	Wheat	cytosol	73.81	72.09
GSMUA_Achr6P00680_001	Banana	cytosol	74.4	72.05
HORVU7Hr1G084630.1	Barley	cytosol	73.21	71.93
Zm00001d046445_P002	Maize	cytosol, extracellular	72.62	71.76
EER90002	Sorghum	cytosol	72.62	71.76
TraesCS5A01G189200.2	Wheat	cytosol	73.81	71.68
TraesCS7B01G254800.1	Wheat	cytosol	73.81	71.68
Os06t0598900-01	Rice	cytosol	72.32	71.05
KRH56652	Soybean	cytosol, endoplasmic reticulum, nucleus	74.4	71.02
KRH03754	Soybean	cytosol	73.81	70.45
EES04724	Sorghum	cytosol	71.43	70.38
HORVU5Hr1G035620.1	Barley	cytosol	23.51	65.29
Zm00001d036905_P002	Maize	cytosol	71.73	63.25
HORVU7Hr1G085770.1	Barley	cytosol	21.73	59.84
HORVU1Hr1G058470.4	Barley	cytosol, nucleus, plastid	38.69	46.59
CDY34145	Canola	cytosol, mitochondrion	23.51	23.94
CDY13713	Canola	mitochondrion	23.51	22.97
CDY71621	Canola	mitochondrion	23.21	22.67
CDY03970	Canola	cytosol	23.51	11.62

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDX81717	ProteinID:CDX81717	ProteinID:CDX81717.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00136643001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44239	PANTHER:PTHR44239:SF1
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE01C1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

BnaC08g38840D

Coordinates

chrLK031826:+:454051..456096

Molecular Weight (calculated)

36939.2 Da

IEP (calculated)

5.838

GRAVY (calculated)

-0.418

Length

336 amino acids

Sequence
(BLAST)

001: MGVPLVCHGH SRPVVDVAYS PITPDGFFLI SASKDSVPML RNGETGDWIG TFEGHKGAVW SCSLDKHAMR AASASADFTA KIWNALTGNE LHSFEHKHIV
101: RACAFSQDTH RFLTGGMEKI LRIFDMNRPD APPKEVGTPP GSIRTVEWLH SDNTILSSCT DTGDIRLWDI RSDKIVQTLE TTFPVTSAEV SQDGRYITTA
201: DGSSVKFWDA NNFGLVKSYE MPCNVESASL EPKNGNTFIA GGEDMWVHRF DFQTGEEIGC NKGHHGPVHC VRYAPGGESY TSGSEDGTVR IWEVNTVNHE
301: EKESNNLSGH VKLVAEEVVR KAESLRITEK ATEAAK

Best Arabidopsis Sequence Match ( AT1G15470.1 )
(BLAST)

001: MGAPLVCHGH SRPVVDVAYS PVTPDGFFLI SASKDSNPML RNGETGDWIG TFEGHKGAVW SCSLDKNAIR AASASADFTA KIWNALTGDE LHSFEHKHIV
101: RACAFSEDTH RLLTGGMEKI LRIFDLNRPD APPKEVGNSP GSIRTVEWLH SDNTILSSCT DTGDIRLWDI RSDKIVHTLE TKSPVTSAEV SQDGRYITTA
201: DGSSVKFWDA KNFGLLKSYD MPCNVESASL EPKHGNTFIA GGEDMWVHRF DFQTGEEIGC NKGHHGPVHC VRYAPGGESY TSGSEDGTVR IWVVGSVNHP
301: EESNLSGHVK LVAEEVVRKA ESLRISEKAA EAK

Arabidopsis Description

F9L1.42 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.