Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G194400.1 | Wheat | cytosol, golgi | 97.65 | 97.65 |
| TraesCS5D01G201800.1 | Wheat | cytosol | 97.65 | 97.65 |
| TraesCS5A01G189200.2 | Wheat | cytosol | 97.65 | 95.95 |
| Os06t0598900-01 | Rice | cytosol | 87.94 | 87.43 |
| EER90002 | Sorghum | cytosol | 86.18 | 86.18 |
| Zm00001d046445_P002 | Maize | cytosol, extracellular | 85.88 | 85.88 |
| HORVU7Hr1G084630.1 | Barley | cytosol | 85.0 | 84.5 |
| Bra030366.1-P | Field mustard | cytosol | 80.0 | 82.42 |
| CDY62165 | Canola | cytosol | 79.71 | 82.12 |
| GSMUA_Achr6P00680_001 | Banana | cytosol | 83.24 | 81.56 |
| CDY61819 | Canola | cytosol | 78.82 | 81.21 |
| GSMUA_Achr2P17000_001 | Banana | cytosol | 81.47 | 80.99 |
| CDY62196 | Canola | cytosol | 79.41 | 80.12 |
| Bra018983.1-P | Field mustard | cytosol | 79.41 | 80.12 |
| AT3G15610.1 | Thale cress | cytosol | 80.29 | 80.06 |
| VIT_11s0016g04710.t01 | Wine grape | cytosol | 81.76 | 79.89 |
| CDY40132 | Canola | cytosol | 79.71 | 79.47 |
| CDX89958 | Canola | cytosol | 79.41 | 79.18 |
| AT1G52730.1 | Thale cress | cytosol | 78.82 | 78.13 |
| KRH56652 | Soybean | cytosol, endoplasmic reticulum, nucleus | 80.88 | 78.12 |
| KRH03754 | Soybean | cytosol | 80.59 | 77.84 |
| VIT_09s0002g05790.t01 | Wine grape | cytosol | 78.82 | 77.46 |
| CDY39650 | Canola | cytosol | 75.0 | 76.12 |
| Zm00001d036905_P002 | Maize | cytosol | 85.29 | 76.12 |
| HORVU5Hr1G035620.1 | Barley | cytosol | 27.06 | 76.03 |
| AT1G15470.1 | Thale cress | cytosol | 74.41 | 75.98 |
| CDY55992 | Canola | cytosol | 72.94 | 73.81 |
| CDX81717 | Canola | cytosol | 72.94 | 73.81 |
| Bra026760.1-P | Field mustard | cytosol | 72.35 | 73.21 |
| PGSC0003DMT400014299 | Potato | cytosol | 75.88 | 72.47 |
| HORVU7Hr1G085770.1 | Barley | cytosol | 24.71 | 68.85 |
| Solyc06g052000.1.1 | Tomato | cytosol | 28.53 | 55.11 |
| HORVU1Hr1G058470.4 | Barley | cytosol, nucleus, plastid | 41.76 | 50.9 |
| HORVU4Hr1G040280.4 | Barley | cytosol, mitochondrion | 22.65 | 22.71 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:HORVU5Hr1G058430 | EnsemblPlants:HORVU5Hr1G058430.1 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M0XKQ7 |
| PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44239 |
| PANTHER:PTHR44239:SF1 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0002969792 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:456872503..456878265
Molecular Weight (calculated)
37022.3 Da
IEP (calculated)
5.396
GRAVY (calculated)
-0.371
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKKAAVPL VCHGHSRPVV DLFYSPVTPD GYFLISASKD SNPMLRNGET GDWIGTFEGH KGAVWSCCLD TNALRAASGS ADFSAKVWDA LTGDELHSFE
101: HKHIVRACAF SKDNHLLLTG GMEKILRVYD LNKPDVAPKE LDKSPGSVRT VAWLHNDQTI LSSCTDTGGV RLWDVRSEKI VQTLETKGPV TSAEVSQDGR
201: FITTADGSSV KFWDANHFGL VKSYDMSFTV ESASLEPKSG SKFIAGGEDM WVHVFDFLTG EEITCNKGHH GPVHCVRFAP GGESYASGSE DGTIRIWQLS
301: PTNTEAEEAA DTNGKPKAGV EEIACKIEGF HIAKEEKAEE
101: HKHIVRACAF SKDNHLLLTG GMEKILRVYD LNKPDVAPKE LDKSPGSVRT VAWLHNDQTI LSSCTDTGGV RLWDVRSEKI VQTLETKGPV TSAEVSQDGR
201: FITTADGSSV KFWDANHFGL VKSYDMSFTV ESASLEPKSG SKFIAGGEDM WVHVFDFLTG EEITCNKGHH GPVHCVRFAP GGESYASGSE DGTIRIWQLS
301: PTNTEAEEAA DTNGKPKAGV EEIACKIEGF HIAKEEKAEE
001: MEKKKVATPL VCHGHSRPVV DLFYSPITPD GFFLISASKD SQPMLRNGET GDWIGTFEGH KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE
101: HKHIVRACAF SQDTKYLITG GFEKILRVFD LNRLDAPPTE IDKSPGSIRT LTWLHGDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG NKFVAGGEDM WVRLFDFHTG KEIGCNKGHH GPVHCVRFAP TGESYASGSE DGTIRIWQTG
301: PVNPEEISES KPKQSVDEVA RKIEGFHINK EGKTAEKPSD A
101: HKHIVRACAF SQDTKYLITG GFEKILRVFD LNRLDAPPTE IDKSPGSIRT LTWLHGDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG NKFVAGGEDM WVRLFDFHTG KEIGCNKGHH GPVHCVRFAP TGESYASGSE DGTIRIWQTG
301: PVNPEEISES KPKQSVDEVA RKIEGFHINK EGKTAEKPSD A
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9LW17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.