CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03754	Soybean	cytosol	98.3	98.3
VIT_11s0016g04710.t01	Wine grape	cytosol	85.51	86.49
GSMUA_Achr2P17000_001	Banana	cytosol	82.39	84.8
GSMUA_Achr6P00680_001	Banana	cytosol	83.24	84.44
Bra030366.1-P	Field mustard	cytosol	78.98	84.24
CDY62165	Canola	cytosol	78.69	83.94
CDY61819	Canola	cytosol	78.41	83.64
Bra018983.1-P	Field mustard	cytosol	79.55	83.09
CDY62196	Canola	cytosol	79.55	83.09
AT3G15610.1	Thale cress	cytosol	80.11	82.7
EER90002	Sorghum	cytosol	79.83	82.65
Zm00001d046445_P002	Maize	cytosol, extracellular	79.55	82.35
AT1G52730.1	Thale cress	cytosol	80.11	82.22
Os06t0598900-01	Rice	cytosol	79.83	82.16
CDX89958	Canola	cytosol	79.55	82.11
CDY40132	Canola	cytosol	79.26	81.82
VIT_09s0002g05790.t01	Wine grape	cytosol	80.4	81.79
TraesCS5B01G194400.1	Wheat	cytosol, golgi	78.98	81.76
Os02t0205400-01	Rice	cytosol	79.26	81.58
TraesCS5D01G201800.1	Wheat	cytosol	78.69	81.47
HORVU7Hr1G084630.1	Barley	cytosol	78.69	80.99
HORVU5Hr1G058430.1	Barley	cytosol	78.12	80.88
TraesCS7A01G372500.2	Wheat	cytosol	78.41	80.7
EES04724	Sorghum	cytosol	78.12	80.65
TraesCS7D01G350400.1	Wheat	cytosol	78.69	80.52
TraesCS5A01G189200.2	Wheat	cytosol	78.98	80.35
TraesCS7B01G254800.1	Wheat	cytosol	78.41	79.77
CDY39650	Canola	cytosol	72.16	75.82
AT1G15470.1	Thale cress	cytosol	71.59	75.68
PGSC0003DMT400014299	Potato	cytosol	75.85	75.0
CDY55992	Canola	cytosol	71.31	74.7
Solyc03g120010.2.1	Tomato	nucleus	75.28	74.44
CDX81717	Canola	cytosol	71.02	74.4
Bra026760.1-P	Field mustard	cytosol	70.74	74.11
Zm00001d036905_P002	Maize	cytosol	78.98	72.97
HORVU5Hr1G035620.1	Barley	cytosol	23.58	68.59
HORVU7Hr1G085770.1	Barley	cytosol	21.02	60.66
Solyc06g052000.1.1	Tomato	cytosol	27.56	55.11
HORVU1Hr1G058470.4	Barley	cytosol, nucleus, plastid	40.34	50.9
KRH40031	Soybean	endoplasmic reticulum	23.01	24.85
KRH23773	Soybean	endoplasmic reticulum	22.73	24.54
KRH74580	Soybean	endoplasmic reticulum	22.44	24.23

Protein Annotations

EntrezGene:100818422	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02002791	EnsemblPlantsGene:GLYMA_05G010900	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	UniProt:I1K1C9	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlants:KRH56652	ProteinID:KRH56652	ProteinID:KRH56652.1	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR44239	PANTHER:PTHR44239:SF1	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002339C93
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

hypothetical protein

Coordinates

chr5:+:951191..957707

Molecular Weight (calculated)

38457.8 Da

IEP (calculated)

5.049

GRAVY (calculated)

-0.399

Length

352 amino acids

Sequence
(BLAST)

001: MEKKKVAVPL VCHGHSRPVV DLFYSPVTPD GFFLISASKD SSPMLRNGET GDWIGTFEGH KGAVWSCCLD TSALRAATAS ADFSTKVWDA LTGDELHSFE
101: HKHIVRACAF SEDTHLLLTG GVEKILRIYD MNRPDAPPRE VDKSPGSVRT VAWLHSDQTI LSSCTDMGGV RLWDVRSGKI VQTLETKSSV TSAEVSQDGR
201: YITTADGSTV KFWDANYYGL VKSYDMPCTV ESVSLEPKYG NKFVAGGEDM WVRVFDFHTG NEIACNKGHH GPVHCVRFSP GGESYASGSE DGTIRIWQTG
301: PLTLDDSETV SANGSVDKVK ETADEVSRKI EGFQIADEGK SKEKDEAVEE SS

Best Arabidopsis Sequence Match ( AT3G15610.1 )
(BLAST)

001: MEKKKVATPL VCHGHSRPVV DLFYSPITPD GFFLISASKD SQPMLRNGET GDWIGTFEGH KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE
101: HKHIVRACAF SQDTKYLITG GFEKILRVFD LNRLDAPPTE IDKSPGSIRT LTWLHGDQTI LSSCTDIGGV RLWDVRSGKI VQTLETKSPV TSAEVSQDGR
201: YITTADGSTV KFWDANHFGL VKSYDMPCNI ESASLEPKSG NKFVAGGEDM WVRLFDFHTG KEIGCNKGHH GPVHCVRFAP TGESYASGSE DGTIRIWQTG
301: PVNPEEISES KPKQSVDEVA RKIEGFHINK EGKTAEKPSD A

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9LW17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.