Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g082840.2.1 | |
| Solyc08g066330.1.1 | |
| Solyc10g074720.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G70210.1 | Solyc04g082840.2.1 | AT1G76540.1 | 12857813 |
| AT1G70210.1 | Solyc08g066330.1.1 | AT3G48750.1 | 12857813 |
| AT1G70210.1 | Solyc10g074720.1.1 | AT3G54180.1 | 12857813 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400040287 | Potato | nucleus | 95.25 | 95.54 |
| VIT_01s0026g00710.t01 | Wine grape | nucleus | 67.66 | 70.37 |
| KRH69476 | Soybean | nucleus | 68.25 | 67.85 |
| KRG99255 | Soybean | nucleus | 64.69 | 62.64 |
| CDY11608 | Canola | nucleus | 57.27 | 60.88 |
| CDY38800 | Canola | nucleus | 57.57 | 60.81 |
| KRH45743 | Soybean | nucleus | 64.39 | 60.28 |
| KRH74675 | Soybean | nucleus, plastid | 67.66 | 59.69 |
| AT1G70210.1 | Thale cress | nucleus | 59.64 | 59.29 |
| Bra007901.1-P | Field mustard | nucleus | 57.86 | 57.52 |
| CDY67142 | Canola | nucleus | 57.86 | 57.52 |
| CDY59943 | Canola | nucleus | 58.75 | 54.85 |
| GSMUA_Achr3P06030_001 | Banana | cytosol | 42.14 | 47.97 |
| GSMUA_Achr9P28180_001 | Banana | nucleus | 42.43 | 47.19 |
| Os09t0382300-00 | Rice | nucleus | 42.43 | 46.43 |
| TraesCS5B01G199100.1 | Wheat | nucleus | 43.32 | 45.62 |
| TraesCS5A01G200500.2 | Wheat | nucleus | 43.32 | 45.06 |
| OQU89443 | Sorghum | nucleus | 43.03 | 43.54 |
| HORVU5Hr1G059770.2 | Barley | nucleus | 43.03 | 40.62 |
| TraesCS5D01G206200.1 | Wheat | nucleus | 43.32 | 39.78 |
| Os06t0236600-00 | Rice | nucleus | 42.14 | 39.12 |
| GSMUA_Achr7P19980_001 | Banana | nucleus | 43.62 | 37.79 |
| Zm00001d020353_P001 | Maize | nucleus | 36.5 | 37.16 |
| Solyc04g076040.2.1 | Tomato | nucleus | 35.91 | 34.08 |
| Solyc11g010460.1.1 | Tomato | cytosol | 31.45 | 33.97 |
| Solyc04g078470.2.1 | Tomato | nucleus | 30.56 | 30.65 |
| Solyc05g051410.2.1 | Tomato | nucleus | 30.86 | 30.23 |
| Solyc12g088650.1.1 | Tomato | nucleus | 29.08 | 30.15 |
| Solyc02g079370.2.1 | Tomato | nucleus | 25.52 | 28.96 |
| Solyc01g107730.2.1 | Tomato | nucleus | 29.97 | 27.75 |
| Solyc02g092980.2.1 | Tomato | nucleus | 29.08 | 27.3 |
| Solyc02g064900.1.1 | Tomato | nucleus | 27.89 | 27.17 |
| Solyc07g054950.1.1 | Tomato | nucleus | 24.93 | 27.1 |
| Solyc12g087900.1.1 | Tomato | nucleus | 24.93 | 26.58 |
| Solyc02g064910.1.1 | Tomato | nucleus | 18.4 | 26.38 |
| Solyc02g064860.1.1 | Tomato | nucleus | 18.1 | 25.96 |
| Solyc03g006670.2.1 | Tomato | nucleus | 23.74 | 25.72 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | UniProt:K4BWD2 | PFAM:PF00134 |
| PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF206 | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | EnsemblPlantsGene:Solyc05g006050.2 | EnsemblPlants:Solyc05g006050.2.1 | UniParc:UPI00027671C7 | SEG:seg |
Description
Cyclin-D1-1 [Source:Projected from Arabidopsis thaliana (AT1G70210) UniProtKB/Swiss-Prot;Acc:P42751]
Coordinates
chr5:-:786643..789497
Molecular Weight (calculated)
37963.8 Da
IEP (calculated)
4.762
GRAVY (calculated)
-0.085
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVSYSDCFS DLLCGEDSDT VFSNGRGEDL PECSSSDIES QFADIDESIA GLIEDEQNFV PGFDYIEKFQ SQSLSAAARD ESVAWILKVQ RHYAFQPLTA
101: YLAVNYFDRF LYLRSLPQTN GWPLQLLSVA CLSLAAKMEE PLVPSLLDLQ VEGAKYIFEP KTIQRMEFLV LRILDWRLRS ITPFSFLSFF AAKLDSLGTF
201: TAFLISRASQ IILSNIQEAS FLEYWPSCIA AATILCAAND LPNFSLVNAE HAESWCHGLR KDKIVGCYEL VQKYAIALRP RRFPRVYPQV RVMTRASTTT
301: TTAVASSDCS SSSSSSSTSY KRRKLNNRWW STTDEDS
101: YLAVNYFDRF LYLRSLPQTN GWPLQLLSVA CLSLAAKMEE PLVPSLLDLQ VEGAKYIFEP KTIQRMEFLV LRILDWRLRS ITPFSFLSFF AAKLDSLGTF
201: TAFLISRASQ IILSNIQEAS FLEYWPSCIA AATILCAAND LPNFSLVNAE HAESWCHGLR KDKIVGCYEL VQKYAIALRP RRFPRVYPQV RVMTRASTTT
301: TTAVASSDCS SSSSSSSTSY KRRKLNNRWW STTDEDS
001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
Arabidopsis Description
CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.