Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY38800 | Canola | nucleus | 79.94 | 84.95 |
CDY11608 | Canola | nucleus | 79.06 | 84.54 |
CDY67142 | Canola | nucleus | 81.71 | 81.71 |
Bra007901.1-P | Field mustard | nucleus | 81.71 | 81.71 |
CDY59943 | Canola | nucleus | 82.6 | 77.56 |
VIT_01s0026g00710.t01 | Wine grape | nucleus | 62.83 | 65.74 |
KRH69476 | Soybean | nucleus | 63.13 | 63.13 |
KRG99255 | Soybean | nucleus | 61.95 | 60.34 |
Solyc05g006050.2.1 | Tomato | nucleus | 59.29 | 59.64 |
PGSC0003DMT400040287 | Potato | nucleus | 58.41 | 58.93 |
KRH45743 | Soybean | nucleus | 61.36 | 57.78 |
KRH74675 | Soybean | nucleus, plastid | 61.65 | 54.71 |
Os09t0382300-00 | Rice | nucleus | 43.36 | 47.73 |
OQU89443 | Sorghum | nucleus | 46.61 | 47.45 |
GSMUA_Achr3P06030_001 | Banana | cytosol | 40.71 | 46.62 |
TraesCS5A01G200500.2 | Wheat | nucleus | 44.54 | 46.6 |
TraesCS5B01G199100.1 | Wheat | nucleus | 43.95 | 46.56 |
GSMUA_Achr9P28180_001 | Banana | nucleus | 41.59 | 46.53 |
HORVU5Hr1G059770.2 | Barley | nucleus | 43.66 | 41.46 |
TraesCS5D01G206200.1 | Wheat | nucleus | 44.84 | 41.42 |
Zm00001d020353_P001 | Maize | nucleus | 38.05 | 38.97 |
GSMUA_Achr7P19980_001 | Banana | nucleus | 43.95 | 38.3 |
Os06t0236600-00 | Rice | nucleus | 38.94 | 36.36 |
AT5G10440.1 | Thale cress | nucleus | 29.2 | 33.22 |
AT5G65420.3 | Thale cress | nucleus | 30.38 | 32.39 |
AT2G22490.2 | Thale cress | nucleus | 33.04 | 30.94 |
AT3G50070.1 | Thale cress | nucleus | 32.45 | 30.47 |
AT4G03270.1 | Thale cress | nucleus | 24.19 | 27.15 |
AT5G67260.2 | Thale cress | nucleus | 31.27 | 26.24 |
AT4G34160.1 | Thale cress | nucleus | 28.61 | 25.8 |
AT4G37630.1 | Thale cress | nucleus | 22.71 | 23.84 |
AT5G02110.1 | Thale cress | cytosol | 21.53 | 21.41 |
Protein Annotations
Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | EntrezGene:843357 | ProteinID:AAB61096.1 | ProteinID:AAL35986.1 | ProteinID:AEE35034.1 |
EMBL:AK117189 | ArrayExpress:AT1G70210 | EnsemblPlantsGene:AT1G70210 | RefSeq:AT1G70210 | TAIR:AT1G70210 | RefSeq:AT1G70210-TAIR-G |
EnsemblPlants:AT1G70210.1 | TAIR:AT1G70210.1 | EMBL:BT005315 | Symbol:CYCD1;1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 |
GO:GO:0051301 | InterPro:Multihaem_cyt_sf | RefSeq:NP_177178.1 | UniProt:P42751 | PFAM:PF00134 | PFAM:PF02984 |
PIRSF:PIRSF001771 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF206 |
SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | SUPFAM:SSF48695 | UniParc:UPI00000041E8 | EMBL:X83369 |
SEG:seg | : | : | : | : | : |
Description
CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
Coordinates
chr1:+:26439556..26443007
Molecular Weight (calculated)
38278.5 Da
IEP (calculated)
5.454
GRAVY (calculated)
-0.048
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.