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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY38800 Canola nucleus 79.94 84.95
CDY11608 Canola nucleus 79.06 84.54
CDY67142 Canola nucleus 81.71 81.71
Bra007901.1-P Field mustard nucleus 81.71 81.71
CDY59943 Canola nucleus 82.6 77.56
VIT_01s0026g00710.t01 Wine grape nucleus 62.83 65.74
KRH69476 Soybean nucleus 63.13 63.13
KRG99255 Soybean nucleus 61.95 60.34
Solyc05g006050.2.1 Tomato nucleus 59.29 59.64
PGSC0003DMT400040287 Potato nucleus 58.41 58.93
KRH45743 Soybean nucleus 61.36 57.78
KRH74675 Soybean nucleus, plastid 61.65 54.71
Os09t0382300-00 Rice nucleus 43.36 47.73
OQU89443 Sorghum nucleus 46.61 47.45
GSMUA_Achr3P06030_001 Banana cytosol 40.71 46.62
TraesCS5A01G200500.2 Wheat nucleus 44.54 46.6
TraesCS5B01G199100.1 Wheat nucleus 43.95 46.56
GSMUA_Achr9P28180_001 Banana nucleus 41.59 46.53
HORVU5Hr1G059770.2 Barley nucleus 43.66 41.46
TraesCS5D01G206200.1 Wheat nucleus 44.84 41.42
Zm00001d020353_P001 Maize nucleus 38.05 38.97
GSMUA_Achr7P19980_001 Banana nucleus 43.95 38.3
Os06t0236600-00 Rice nucleus 38.94 36.36
AT5G10440.1 Thale cress nucleus 29.2 33.22
AT5G65420.3 Thale cress nucleus 30.38 32.39
AT2G22490.2 Thale cress nucleus 33.04 30.94
AT3G50070.1 Thale cress nucleus 32.45 30.47
AT4G03270.1 Thale cress nucleus 24.19 27.15
AT5G67260.2 Thale cress nucleus 31.27 26.24
AT4G34160.1 Thale cress nucleus 28.61 25.8
AT4G37630.1 Thale cress nucleus 22.71 23.84
AT5G02110.1 Thale cress cytosol 21.53 21.41
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.4EntrezGene:843357ProteinID:AAB61096.1ProteinID:AAL35986.1ProteinID:AEE35034.1
EMBL:AK117189ArrayExpress:AT1G70210EnsemblPlantsGene:AT1G70210RefSeq:AT1G70210TAIR:AT1G70210RefSeq:AT1G70210-TAIR-G
EnsemblPlants:AT1G70210.1TAIR:AT1G70210.1EMBL:BT005315Symbol:CYCD1;1InterPro:Cyclin-likeInterPro:Cyclin-like_sf
InterPro:Cyclin_C-domInterPro:Cyclin_NGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0007049GO:GO:0008150GO:GO:0009987
GO:GO:0051301InterPro:Multihaem_cyt_sfRefSeq:NP_177178.1UniProt:P42751PFAM:PF00134PFAM:PF02984
PIRSF:PIRSF001771PO:PO:0000013PO:PO:0000014PO:PO:0000037PO:PO:0000084PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281ScanProsite:PS00292PANTHER:PTHR10177PANTHER:PTHR10177:SF206
SMART:SM00385SMART:SM01332SUPFAM:SSF47954SUPFAM:SSF48695UniParc:UPI00000041E8EMBL:X83369
SEG:seg:::::
Description
CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
Coordinates
chr1:+:26439556..26443007
Molecular Weight (calculated)
38278.5 Da
IEP (calculated)
5.454
GRAVY (calculated)
-0.048
Length
339 amino acids
Sequence
(BLAST)
001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.