Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009031.1-P | Field mustard | nucleus | 76.85 | 77.1 |
| CDX97009 | Canola | nucleus | 75.5 | 76.79 |
| CDX69832 | Canola | nucleus | 76.51 | 76.77 |
| AT5G65420.3 | Thale cress | nucleus | 70.13 | 65.72 |
| KRH69654 | Soybean | cytosol | 35.57 | 43.62 |
| Solyc11g010460.1.1 | Tomato | cytosol | 45.64 | 43.59 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 34.9 | 41.77 |
| PGSC0003DMT400037827 | Potato | nucleus | 47.99 | 41.57 |
| Solyc05g051410.2.1 | Tomato | nucleus | 46.31 | 40.12 |
| KRH74510 | Soybean | nucleus | 48.32 | 39.89 |
| KRG99448 | Soybean | nucleus | 47.65 | 39.66 |
| KRH45568 | Soybean | nucleus | 45.97 | 39.6 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 45.64 | 39.19 |
| VIT_00s0199g00210.t01 | Wine grape | nucleus | 46.31 | 39.09 |
| GSMUA_Achr10P... | Banana | nucleus | 41.95 | 38.94 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 45.64 | 38.86 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 43.96 | 37.75 |
| Zm00001d018128_P001 | Maize | nucleus | 44.63 | 37.46 |
| GSMUA_Achr10P... | Banana | nucleus | 42.95 | 37.21 |
| PGSC0003DMT400041637 | Potato | nucleus | 48.99 | 37.06 |
| Zm00001d052185_P001 | Maize | nucleus | 44.63 | 36.94 |
| TraesCS6B01G345300.1 | Wheat | plastid | 43.62 | 36.83 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 42.95 | 36.68 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 43.96 | 36.59 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 42.95 | 36.47 |
| AT2G22490.2 | Thale cress | nucleus | 43.96 | 36.19 |
| EES07560 | Sorghum | nucleus | 42.95 | 35.75 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 42.95 | 35.75 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 41.28 | 35.55 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 42.62 | 35.18 |
| KXG19603 | Sorghum | nucleus | 35.57 | 30.46 |
| AT1G70210.1 | Thale cress | nucleus | 33.22 | 29.2 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 23.83 | 28.17 |
| AT4G03270.1 | Thale cress | nucleus | 25.5 | 25.17 |
| AT3G50070.1 | Thale cress | nucleus | 28.19 | 23.27 |
| AT4G34160.1 | Thale cress | nucleus | 27.85 | 22.07 |
| AT4G37630.1 | Thale cress | nucleus | 22.48 | 20.74 |
| AT5G67260.2 | Thale cress | nucleus | 25.84 | 19.06 |
| AT5G02110.1 | Thale cress | cytosol | 19.46 | 17.01 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | EntrezGene:830908 | ProteinID:AED91540.1 | EMBL:AK228653 | ArrayExpress:AT5G10440 |
| EnsemblPlantsGene:AT5G10440 | RefSeq:AT5G10440 | TAIR:AT5G10440 | RefSeq:AT5G10440-TAIR-G | EnsemblPlants:AT5G10440.1 | TAIR:AT5G10440.1 |
| EMBL:BT012602 | EMBL:BT014959 | ProteinID:CAB89399.1 | Symbol:CYCD4;2 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0007049 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010440 | GO:GO:0051301 | RefSeq:NP_196606.3 |
| PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PO:PO:0000293 | ScanProsite:PS00292 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF337 | UniProt:Q0WQN9 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0000196C96 |
| SEG:seg | : | : | : | : | : |
Description
CYCD4-2Cyclin-D4-2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQN9]
Coordinates
chr5:-:3280487..3282553
Molecular Weight (calculated)
33777.4 Da
IEP (calculated)
6.370
GRAVY (calculated)
-0.180
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEFMEPNLV SNFDDEKSNS VDTRSIFQMG FPLESEEIVR EMIEKERQHS PRDDYLKRLR NGDLDFNVRI QALGWIWKAC EELQFGPLCI CLAMNYLDRF
101: LSVHDLPSGK AWTVQLLAVA CLSLAAKIEE TNVPELMQLQ VGAPMFVFEA KSVQRMELLV LNVLRWRLRA VTPCSYVRYF LSKINGYDQE PHSRLVTRSL
201: QVIASTTKGI DFLEFRASEI AAAVALSVSG EHFDKFSFSS SFSSLEKERV KKIGEMIERD GSSSSSQTPN NTVLQFKSRR YSHSLSTASV SSSLTSLS
101: LSVHDLPSGK AWTVQLLAVA CLSLAAKIEE TNVPELMQLQ VGAPMFVFEA KSVQRMELLV LNVLRWRLRA VTPCSYVRYF LSKINGYDQE PHSRLVTRSL
201: QVIASTTKGI DFLEFRASEI AAAVALSVSG EHFDKFSFSS SFSSLEKERV KKIGEMIERD GSSSSSQTPN NTVLQFKSRR YSHSLSTASV SSSLTSLS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.